BtaINT0145004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37242779-37244692:-
Coord C1 exon
chr2:37244601-37244692
Coord A exon
chr2:37242926-37244600
Coord C2 exon
chr2:37242779-37242925
Length
1675 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTCTGGTTTTTTATTCCTAGAAA
3' ss Score
7.47
Exon sequences
Seq C1 exon
GAAATGCTGCCTGGGCGATGGCTACTTCCAAACCTGATATTTTGATTATACTTTTACAGAAATTGATGGAGGAAGGAAACGTGATGTACAAA
Seq A exon
GTAAGTGGTATCGCCCTTTCTGGGACGCCATGACAGCCTGCAAGCAGCCTTAGTCGGGGGTGTAATGGATATAGCTGTGCTGCTGCACAGGATGCACGGAGCTCAGCGAGCAGACGTTCCGGGAGGTGCCATCCTGGCCTCAAGCCCGGGCTTTGATATCTTAACAGCAGAATCTTCCAGGTGGAACGCACTCCTCTTTGTGTCTGGGAACCATTATTTCTGAACAAATCCTTGTGGCTGTAACTATGATTTACAGCCTGTAGCTTTGCTATGGAGGCAGAGTAGCTTCTAGTTTAACGGGCACGTCCTACAGGAAATTCTTTGGCGCCTGGAATCATGAGACGTGGGAAAGGAACACTCAGGAGACATTTTCATAAGAAAAGAATCATGCAATCTCCCAAGCCTTTATTATCTTCATTTTAGTATCTATAAGCCTCTCGAATTTGAAACTGTTTCTGGAGAGATTTTTACTTAAAATAGTCAATAATATATAATACTCAGGAGGCAAATTAATTTTTTTCTCATTTTCCCTTTGAAATGCAAAGACAATTTAAAGAGTAGTGATTTTGACTTGAACAAATTTCACACTAAGACGTCCAGTTTAGATCGGGGGTCAGTACACTTTGCCTGGAGAGAGGAGGGGAGGAACTATGGTAGGCTTTGCTCTGTGGTTCTTGTCACACACACCACACACCCCGCACCCCACCCCCACCCCAAACTGTGCTCTTGTGGCACAGACTCAGCCACAATGACACACAGAGGAGCCAGGCCAGGTTCCAAACCGTGTTTGCAGAAATAGCAGGCCAGGTTTGGCCCAGAAACTGTAGTTTGCAAACCCTGAGTTTAGAGAAATAGGCCATTTCCATAGATCATCATTCTTTCCAGGTCTCTGATTAGAAAGAATTAAAAGATTATGAAAACAAAAAACTATCAATACATCATGACCGTTTTAATCCTTTTTGCCATGAAGCAGCTGCACTTGCTGTGTTTTCCTTTTCTTTCTTTCTTTCTTTTTTTTTAAATAATAACAAATAAATAGGCGTATAGCATGACCCAGCAGGGTTCCTGGCTTGGAATCAGTTTGAAATTGAGTTCAGAGTGTGTATTGTTGTGGCTTTGAAGTGGTTTTAATATGAATTTTGGTTGGCAATTATGTTAGAAATACTAAGCCATTTCAACAGACTTCATACCTGCTGCGAGACAGACCCGACAGAGCAAATGGATTTCTTTAGCCTTGAAAATGATGTGCGGTGCTGCGTGGGGTTTTAAAGCCCGTGTTTTAGTTTTTCTTAAAAGAAAAATTATTATTCTCCAGCAAGCTCTAGGTTTATCCACAAGACTCTACTTGCCTTGAGAACGCCATCATTTTTCCATCTGATTTCTGTTAACGCTTTGCATGAAAGTGTCCTTACATGAGAGATCATTCATGAAATGTTTGTTGAAAATATGTAATGGGGATGATAGTCCAGTGTTTTAAGACTGATAGCTATGGGTTTGGCGATTTACGGATCCCTCCCTATAACCGGGTTCTGGTCACAGACATCTATGTGGGCAGTGAGGCCACGTGGCCCTGCCGGTTTGTGGACTGGTTCTGGCCACAGCCCGTCCTCATCAGGGTCCTTATTCATCTTGCAGCCTCTGAAAAAGATAAATTTCTCTGGTTTTTTATTCCTAG
Seq C2 exon
AAAGGGAAGATGAAAGAAGCAGCCCAGAGGTACCAGTACGCCTTAAGGAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCATTCAATGAGCTAAGAGTTTCCCTCTATCTCAATTTGTCTCGCTGCCGAAGAAAAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(16.2=41.9)
A:
NA
C2:
PF134141=TPR_11=FE(60.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCTGCCTGGGCGAT
R:
GTTTGTTTTTCTTCGGCAGCGA
Band lengths:
239-1914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]