HsaINT0163616 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160082199-160084476:+
Coord C1 exon
chr2:160082199-160082290
Coord A exon
chr2:160082291-160084329
Coord C2 exon
chr2:160084330-160084476
Length
2039 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTGTGATTTTTGAATCCTAGAAA
3' ss Score
5.34
Exon sequences
Seq C1 exon
GAAATGCTGCTTGGGCGATGGCCACTTCCAAACCTGATATCTTGATTATACTTTTACAGAAATTAATGGAGGAAGGAAATGTGATGTACAAA
Seq A exon
GTAAGTGGTTCCGCCCTTTTCTTTGCCATTGAAACTGCCTGGGAGCACCCTCTTAATTGGGTACATAATGGCTACAGCTGTGCTACTGCACAGTCTCCATGTAATAGAAGTGCAAAAAGTGGCTGGGTGGGGTGGCTCACGCCTGTAACTCCAGCACTTTTGGAGGCCGAGGTGGGCAGATCACTTGAGGCCAGGAATTCCAGACCAACCTGGCCAATATGGCAAAACCCCATCTTTACTAAAAATACAAAAATCAGCCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGTTTCAATCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTCAGCAACAGAGTGAGACTCAGTCTCAGAAGAAAAAAAAAAAAAGTGCCAAGAGGTGCTGACCTGGCCTCATGCCCGTTGTTGGCTTAATATCTTTCCGGCAGAATCTTAAAGGTAGAAAGCACCTCTCTTTGTGTCTGAGAGCCATTATTTCTGAGCTAATCCTTGAGGTTGTAGTGGTGACTTCCTGTCTGAAGCCATGGCGTGAAGCTGAGTCACCTCTAGGTCAACTGAACATCATAGAGAAGGTTCCTCAGCCCTTCACATTCTGAGTTCAGAACACCATGCTGAGGCACAGTCATGAGACGTGGGAGAGGAACACCCAGCAGACATTTCTAGAAGAAAAGGGTTATTCTGTCTCCTAAGCCTTTCCTAATTTTTAATATCTATTAATTTCTAGAATTTGAAAGTGTTGTTAGAGATTTTTACTTAATACAGTCAAGTAATACCTCAGTTACTCAGAAGACTGAATTAATTTTTTCCATTTTCCCTTGGAAATGGAAATATGATTTACAGATCAATAAACTTCACTTTAAATTTTTCCAAATAAGACATCAGTTTAGGTCAGAGGTCAGCAAACTTTTTTTGTAAAGGGCCAGACAGTAAATGTTTTAGGCTTTGCAGACTGTGTGGCCTCTGTCACAACTCCCCAGTTCTGATGTGGGGGCACAGATAGCACAGAGTGAATGAACACAGCTGTGTCCCAATAAAACTTTATTTGTAAACACAGGTGGCTGGCCAGACTTAGTATCCAAGCTATAGTTTGCCAACCCCTGGTTTAGATAGATATGCAGGCCATTTGCATAGGTCACTATTCTTTGCAGCTCTGTGATTAGACAGAATTAAAAGATTATAGGGGAAAAACTAGATTATGACCATGTTAATCCTTTTTACTGTTAGGCAGCTGTATTTGGTATGTTGTAGATTTTTTCCTTCTCATTTTTTAAAATAGTAACAAATAAATAGGCAATATAGCATGACCCAGCAGGGTTCCTGGCTTGGAATCAGCTTGAAATTGAGTTGAGTGTATTGTTGTGGCTTTGAAGTGCTTTTAATATGGATTGGTAGGCAATTATGTCAGAAATAGGAAGCCATTTTCAACAGGCTTCATACCTGCTGTGCAATGGGACTGACTGAGCAAATGGATTTTTTTAGCTTTGAAAATGATGTGTGGTGCTGTTCTGATTTTTAAAGCCCATGTTTTAATTCCTCTTAGAAGAAAAATTATTATTCTGCAGCAAGCTCTCTAGGTTTATCTACAAGATGCTACTTGTCCTAGGAATAGGATCAGTTTTTCATCTGATTTCTATTACACTTAGCATTCAAATAGATTTGAGATCATTCTTGAAATAATTTTCAAAAATACATACCAGAAGGTAATCTGATTCATTAAGTTTGGTAATTATCAATCTAGCAGTTTACAGACACCTTATTGTAAAACCAGCTTCTTTCTCACTGTGTAACCACAGGATGCGGGTGCATGTGAGGACAGTGAAGCCCTCATGTGCCAGCCCAGTTAGTGAACTAGCTCCCACCTTGACACTTGTTTGGATGCTTTCAATGTTCTGTCGTGGGTTTGCAGGGGGGAGTAAACTCCCCACGGTGTTCCAGGTGTGGGAGTTATTCATTTTAGAACCTCTGAAAAAGGACAAATGTTTGTGATTTTTGAATCCTAG
Seq C2 exon
AAAGGGAAAATGAAAGAGGCAGCCCAGAGGTACCAGTATGCCTTAAGAAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCCTTCAATGAATTAAGGGTTTCCCTCTATCTCAATTTGTCGCGATGCCGAAGAAAAACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(3.2=9.7),PF134141=TPR_11=PU(16.2=41.9)
A:
NA
C2:
PF134141=TPR_11=FE(60.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)