GgaINT0143992 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2621538-2623314:+
Coord C1 exon
chr27:2621538-2621629
Coord A exon
chr27:2621630-2623167
Coord C2 exon
chr27:2623168-2623314
Length
1538 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACACGTTCTCCTTCTATCAGAAA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
Seq A exon
GTGAGAAGAGTTTTCTTGAAGAGACAGGGAAAATGCAGCTCACAGCATGTATTTGTTCCTCCTTTGATAGCAGTGTGAGCAGTGCTGCTGCCTTAAAGCCTGCGGGATTCCTTGTGCTGCAAACTGGCTTTGGTTAGTGGGGTTGGGCAGGGGGAGGTTGAATGCCAAACTCCCTAACAAAGCTGAAGCAAAGCCAAGGCTGTGTGCATTCTGGGCTTGAGCCAGCACTTCATTTCCTCCTTGAGAACACCAGAACCCAAGTGCTTTCCAGAGGTTCTCAGTGCTGATGTCATCGCATCAAATCTGGCAGCGTTGTGGTTACCTAGCAGCTCTGTGCTGTGAGCAACAGGGCAGCATAGCCCAGAGAAACCTGTGAAGGAAAAGGAACTTTCTGTGATGGAAACAGACACAGGTGGCTTGTCGTTGTCCTTTAGCTTGTGGGATGTGTTTTACCGTTATGGTTAGAGTTGCTTTTGCTCCTTGTGTATTAAGACCTGGAGATCAGCGCACACACACAAAAATGTGCAAGTACAACAATGATTCAGTGTGAGGCTCCAAGGGTAAAGCAGAAAATATGCAAAGCTGGCATTGCGACTGCAGTTATCTGCCAGAGATACGTGATACGACTCCGAAACCTGAATCTAAGAGGTTTTAAAGCTTACTGCTCATAGCTGCAAAACTTCTGTCTGGGTCACCATGAGTCGTGTGCGTCCCAGATCCCATTCTGCCCTCTTTCTCTCACTGCAGCTGCTATGGATGCCCCCCTTTAGGGCACAGATCCCGAAATAGCAAGGCTGAGTCACCTTTTGAAGGTGACTGTTGCGTCCCAATAACGATAAAAGGAACCCAACTGACAGGCTTAGATGTAGACACCTAATTTCTAGACATCTGAACTCCAGGAGTTGAGTCCCAATCCATTTGTCCAACGTCAGAACCACATCAGCGCCGTAACACTTATCTTTGCTATTGCTGTTACACCCAAAGAGCAATGCTTTGTGTTCCTTACCCTCCCTGGTGCTTGCAGAGGTTTGAGTCAGGACGGAGTGGTGTGGAAGGCTCATTGCCAGAGTGCTGCTCCTCAGCACCATGAAGTTGCACTGGATATGCACTGTGTGGCTGCTGAGGTGCACAGCATCAACCTCTGATGTTGTTGTTAGTGGGGTGCCAGGAGTGCATCTTCCTACAGGAGGGATGTAGGGTCCTCTGCAGAGCTGGCTTACTGTTCACCCAGCTCAGAAGTCCATTTGTCCATAAACCAGAGTTGGATCAAGTTATTAAAACAATTCTTGCTGAGTTTCCCACTGCCTGAGAGTGGGAGAACTCAACTTGCACATGGCATCTGCATTTCCAGATCAGATACTGGACATGCTCTGGCTTTCATCTCTAGAAAACAGCTAAATAATGAGATCATGTTACTCTAGAAAACAGCTAAATAATGAGATCGTGTTACCTTCACCGCCAAAACACCCGTGGGTCTGGCAGTGCTTTGCAGTAAACTCACCCAAAGGATTTGCTTTGACACGTTCTCCTTCTATCAG
Seq C2 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCAACATGGGCGATG
R:
TTCATTTTCCTTCGACATCGGGA
Band lengths:
238-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]