BtaINT0145028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48398315-48400400:+
Coord C1 exon
chr19:48398315-48398406
Coord A exon
chr19:48398407-48400253
Coord C2 exon
chr19:48400254-48400400
Length
1847 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGTCTTGTGCTCCCACTAGAAA
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq A exon
GTGAGGGGAAGAAGGAGGTTTCTCCCGATGGCCGCTGACTCTGCCCTGCACGTAGACTTCACCAGAGTCTTGGTAGGGTTCTAGAGTCATCAGGAGAGTGCCATCCCTCAGTGGAGGGCTCATAAGCTGAGGATCCCAGATTTTTGCTTTCTCAACGTGGGCCTACATGTGCCCACAGCTGATCAACCTAAAGACCTGGTTTTCACCTGGTCACTGATAGGTGGTGCCATAGATTCTACATGGAATCTGTTTATCAGAGCCTGGAAACCATGGGACAGGGAGAAGAAAAATAGGTACTGCAGGCAAGAGGCATTGATGTTAGCATTTATGTTTACTATATGTGTAGATTTAAAAGTCTGTAGTAATAATAGCTTATTGGCATCCCTGAGTAAGATAAGGAAACTGAGACAAAGAGCAGTTATAGATTTACTTGAAATCATTAGCTGAATGACAACAAAAAAAGATATGGAGTCTTGTATTCACGATTCAGGCTGAAGGCTCCATACCCTAACACACACAAACTGCCAGGGGCTGTAGGAGGGCCGTTAAGAACTTTCCATGTCAGAGTCATCTCATTGTATGAGGACTAGCTGAACCTTCTCCTCCTGAAGGTAAATACAAATCCAACCCAGCTTTTGGCAGCGGGTGTCACTGAGACATGCCTAGGCCCAGAGAGGAGGAAATGACTGTGACACACGTTATTTCCGCTTTATGTAAGGAGTACAGAGCTCCTGTGAGTAGAGTTGTATTTCCTGAGGACCATTGTGTGAAAGCTTGATAATCTAGGTCCCTTAGGCTTCTGGGAAACAAGCTCTGGCCCAGTCCCGATTTTACACGACTTCACAGAAGGGCCTCTCTAGGCGGCGTACTCATGGACTTGAGAATGGCCGTGCTGTCAAGAACTTAAGCCCTCTTTATGACATAACTTCTGGCATCCTGAGACAAGGCGTCCTGCCTCCTAATGAGAACAGCCAGAGCTACTCCTGTTCCCACCCAAAATTCTGCCTTGGAAGACTCCAAGTCTGTCCTCAGTGAAAGAGAAAATACAAGCTCAGGATCTCTGCCTGGAGTTACAACTACACAGAAGGAATGGAAGGAATAAAAAGATGAGCTAACAGAATGGGAGATGCCTCCCGCACCATTCTGGGCTCCACTTACAGATTTTTCAGAAGAAAAATGTAAGAAAAGTTCGAGGCCCCTGTGACCTAGGTCCCTCAGTGACTCATAGATTTACTTGGAAAATGCCTCCTACCTAGTCAGGTGGAATCACAGATTCTCAGTTTCACATCTCTACCACCACTGCACCCATGCCTCTTCCAAAAACAGAGAAAGACTCACTATTTTATCAGTAGTATTAGGGAAGCAACAGAGAGACTCGTTGAGCTCCCACATCCTCTGTGGAGAACAGCATGGCCTTTTCTAGAGGACTGGCAAGGTGAAACAAAAAGAGTTTTCCAGATAGGCCAAAGGTCAAGAAATAGTGATAAACTTGGAGCGATCAGGACTAGGAAATGCTGTGTCCCGGGGAGATTGGGCCAAGAACAGGCTCCTTTGGAATGAATACAGTCAGTCGTTCGGAAATCCAGTTGGGAAGCCGGGGCCCCAGGTCTTTCATTTGCCAAGGCTTTGTGTCTCTGGCTTGTGTCTTGGGAATCTCCCTCACCACGCCTTGCCTGCCAGGCGAGCTCCCAGTGGAAAAGATGGGACCTTGTCCTGGCACCACTGGGGTGGAGCTGGGGAGGGCTAACCCTGAGCGGTAACTGCAGAGAAAGGATGGGAACGGGAGCAGACCTCCTCAGCTGCTCAGCAGACCAACACTGTGTTTTGCTGTCTTGTGCTCCCACTAG
Seq C2 exon
AAAGGTAAAGTAAAGGAAGCCGCCCAGCGCTACCAGTATGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTGAAGGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249:ENSBTAT00000005565:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(22.4=30.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCACCTCCAAACCAG
R:
TTCATTTTCCTGCGACATCGAGA
Band lengths:
222-2069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development