GgaINT0143992 @ galGal3
Intron Retention
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2538890-2540666:+
Coord C1 exon
chr27:2538890-2538981
Coord A exon
chr27:2538982-2540519
Coord C2 exon
chr27:2540520-2540666
Length
1538 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACACGTTCTCCTTCTATCAGAAA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
Seq A exon
GTGAGAAGAGTTTTCTTGAAGAGACAGGGAAAATGCAGCTCACAGCATGTATTTGTTCCTCCTTTGATAGCAGTGTGAGCAGTGCTGCTGCCTTAAAGCCTGCGGGATTCCTTGTGCTGCAAACTGGCTTTGGTTAGTGGGGTTGGGCAGGGGGAGGTTGAATGCCAAACTCCCTAACAAAGCTGAAGCAAAGCCAAGGCTGTGTGCATTCTGGGCTTGAGCCAGCACTTCATTTCCTCCTTGAGAACACCAGAACCCAAGTGCTTTCCAGAGGTTCTCAGTGCTGATGTCATCGCATCAAATCTGGCAGCGTTGTGGTTACCTAGCAGCTCTGTGCTGTGAGCAACAGGGCAGCATAGCCCAGAGAAACCTGTGAAGGAAAAGGAACTTTCTGTGATGGAAACAGACACAGGTGGCTTGTCGTTGTCCTTTAGCTTGTGGGATGTGTTTTACCGTTATGGTTAGAGTTGCTTTTGCTCCTTGTGTATTAAGACCTGGAGATCAGCGCACACACACAAAAATGTGCAAGTACAACAATGATTCAGTGTGAGGCTCCAAGGGTAAAGCAGAAAATATGCAAAGCTGGCATTGCGACTGCAGTTATCTGCCAGAGATACGTGATACGACTCCGAAACCTGAATCTAAGAGGTTTTAAAGCTTACTGCTCATAGCTGCAAAACTTCTGTCTGGGTCACCATGAGTCGTGTGCGTCCCAGATCCCATTCTGCCCTCTTTCTCTCACTGCAGCTGCTATGGATGCCCCCCTTTAGGGCACAGATCCCGAAATAGCAAGGCTGAGTCACCTTTTGAAGGTGACTGTTGCGTCCCAATAACGATAAAAGGAACCCAACTGACAGGCTTAGATGTAGACACCTAATTTCTAGACATCTGAACTCCAGGAGTTGAGTCCCAATCCATTTGTCCAACGTCAGAACCACATCAGCGCCGTAACACTTATCTTTGCTATTGCTGTTACACCCAAAGAGCAATGCTTTGTGTTCCTTACCCTCCCTGGTGCTTGCAGAGGTTTGAGTCAGGACGGAGTGGTGTGGAAGGCTCATTGCCAGAGTGCTGCTCCTCAGCACCATGAAGTTGCACTGGATATGCACTGTGTGGCTGCTGAGGTGCACAGCATCAACCTCTGATGTTGTTGTTAGTGGGGTGCCAGGAGTGCATCTTCCTACAGGAGGGATGTAGGGTCCTCTGCAGAGCTGGCTTACTGTTCACCCAGCTCAGAAGTCCATTTGTCCATAAACCAGAGTTGGATCAAGTTATTAAAACAATTCTTGCTGAGTTTCCCACTGCCTGAGAGTGGGAGAACTCAACTTGCACATGGCATCTGCATTTCCAGATCAGATACTGGACATGCTCTGGCTTTCATCTCTAGAAAACAGCTAAATAATGAGATCATGTTACTCTAGAAAACAGCTAAATAATGAGATCGTGTTACCTTCACCGCCAAAACACCCGTGGGTCTGGCAGTGCTTTGCAGTAAACTCACCCAAAGGATTTGCTTTGACACGTTCTCCTTCTATCAG
Seq C2 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(22.4=30.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCAACATGGGCGATG
R:
TTCATTTTCCTTCGACATCGGGA
Band lengths:
238-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]