HsaINT0163637 @ hg19
Intron Retention
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61490904-61493035:+
Coord C1 exon
chr17:61490904-61490995
Coord A exon
chr17:61490996-61492888
Coord C2 exon
chr17:61492889-61493035
Length
1893 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCATCTTGTGCTCCCATTAGAAA
3' ss Score
6.25
Exon sequences
Seq C1 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAGCCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq A exon
GTGAGGGGAGGGAGGGACACAGTTTCTTCAGAACAGCCACTGACTGTTTTCCATGTGTAGAATCTTACAAAGTCTTGATAATTCTCATCCTTTGCGTAGAGGCAAAGGGAAACTACTGTTCCTCAGTGATGGCCTCATATGTTGGGGATCCTGGGGTTCTGCCTTACCAAGAGAGCAAGAGTAGCCTATAGTTGCCTGCAGCTGATCAATCTAAAGCCCTGGTTTCACCTGGTCACTCACCCATGGTTTTGTCGATTTTTACATGGAATCTGTTAGGTAGGATCTGGAAACTCATGAGACAAGTCAAAGTAAAATTATGTAGTATAGCTATTTCCAGTATGTTGATCCTAGCTTTCATATGTCATAATATATACATAGATTAAAAAGTATATAGTAACAATAGCTTATCAGCATCCTTGAATAAGATAAGGAAACCAAGACAAATAGCAATTATAAGATTTGTTTGAAATCATTCACTGAATGACAATAACAAAAACTGTGGAGGCTTTTTGTACTCACAGTCCAAGCTGAAGGCTCCATACCCTGACACAAATGAATTCCTTGGTCTATTACATGTCAAAGTCATCGCACTGGATCAGCTGGATTACCCTGTCCCGAAGCTTCATACAAATCCAACCCAGTTTTTGGCAGCAGTCATCACTGACACTTCCCCAAGACTAAAAGATAAGGAGAAATAGTTGTGAAGCATATTATTCTCACCTGTGTCAGGAGTGTACAAGTTCCTAGGAGCAGAATTCTATCTTCTAAGTACCCTTTGAATGAGTCACGGTAATCTAGGACTCCCAGGCTTTCAGGAAGCTTAAGCCCTGGCCCAACCTTGATTTTACGTGACTTCATAGAAGGTCCTCATTACCCTAGATGTCATATTTATGGACTTCACAATGGCATTACTCTCAGATTATGTCCTGGTTATAGCATAACTTCTGGTATTCTGAGGCGAGGAGTCCTCTTAATGAAAATATGCAGTGCCATTATTGTTCCCCTCAGAATTCTACCTTGAAAGACTCCAAATCTCTCCTTAGTGAATGGTGCTAAGGGAAAAGTAAAAGACTGGGATCCCTGTGGAGTTGTAACTATAGAGAAGGAATAGAGTGGATAAAGATCAGCTAAAGGGGTGGGAGATGCCGCCTGCATCTTTCTGGTCTCAGCTTATAGATTTTCAGATACAAAGTGGAAGAAAAGTTCAAGGTCGCTGTGGCCAGATCTCTAAATTGGTCATAGATTTACTTCCTCTTGGATAATCCCTCCTGCAACATCAGATGGAATCACAAACTCTAAACTTCACTTTTCTACTGCCACCCTACTCCATGCCTTTCCAAAAATGGGGAACACTGATTGGTATTATTTTATGCCATGAGATTAGGGAAGCAACTGCTAGACTGCTTTAGCTCCCACATCCTTCATGAGGAAGAGAGTGACTTCTAGAGGGCTGGCCAGGTGGAGCGTCAGACCAAAAAAACAGTTCTCCAGACAAGCCAGAAATTAAGGAGGAAGTAATAACTTTGGAGTGCTTGGGGTTAGGAAGTCATATGTGTTATAGAGAGCAAAGGAACTTTGAAATGAGCATGGTCAGCCTCTTTGGAATCCAGTTGGGAAGTCAGGGTCCAGGGCCTTCCATTTGCCAAGGCTTTGCCTCCCTGGCTTGTATCTTGGGTATCCCCTCAACCTTGCCTTTCCTGCCAGGTGAGTTTCCTATAGAAAAGACTAGACCCTTCTGCCCTCACCATCAGGGCCAGAACTCCTCTCTAGGCTGGCGTTTGGGAGGGTTAGCCCTTAGTAACAGCTGCTGAGAAGAAGAAGGGAGTGGGGACCACACTTCCTCAGCTGTTCAGCAGACCAACTGTGTGTTTCGCCATCTTGTGCTCCCATTAG
Seq C2 exon
AAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACTTTCCGGGAACTAAAGGTGTCTCTCCTCCTCAACCTCTCTCGGTGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-TANC2:NM_025185:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(17.4=38.7)
A:
NA
C2:
PF134141=TPR_11=PU(22.4=30.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCACCTCCAAGC
R:
TCATTTTCCTGCGACACCGAG
Band lengths:
222-2115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)