DreINT0160171 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22672225-22674591:+
Coord C1 exon
chr3:22672225-22672316
Coord A exon
chr3:22672317-22674444
Coord C2 exon
chr3:22674445-22674591
Length
2128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAATTGTGTTGCTGACACAGAAA
3' ss Score
3.44
Exon sequences
Seq C1 exon
GTCCTGCAACATGGGCAATGGCCACATCCAAACCTGATATTATGATTGTTCTGCTCAGCAAACTCATAGAGGAAGGAGATGGATTCTACAAG
Seq A exon
GTGAGTGGCTTTTTATGTAGAGTCAGAAAAATGTTAACGTAAGTGTACACTAATTATGACAATACTGCATTTTTTTTTTATTATTAAAGGAGACCCATTATGCCCCTTTTTACAAGATGTAAAAAAGGTCTCTGATGTCCCATGAGTGTGGATGTGAAGTTTCAGCTCAAAATACCATACAGATAATTGTTTATACCTAGGCTTTTAGGCTTTGATACTGATTGTGCTGTTTTGATGGCTATTGCGTTAAATTCAAATGAGATTGTGCCCTTTCAAAAGAGGGCGGAACTACATTTGCATATTCGTTAGCATAGTGGCAGATCCAAAACTGAACTAATGTTGTCTCTCTGAATGTCTTTAGAAGTGGATCATCTGTTCATTTGTGCATCCTAGTTCCACATTTATATTGTCTTTTAGTCACTGACATTATTTTTAGCTGGTGAAAACTCTGGTGGAAAGCTGCTTCTCACTCAGAGCTGTCTATGCTAATGAGGGAGAGATCGTCACTAATGGGTGGGACTTTCCTCCTCTGATAACACTTACAAAGGGAGAATGTGATTTAAATTGTTTCTGCAGCCTGTTTTAGGGAGTATGATTATAAAAAAACTGAATTAATTGTTTTTTACTATTAGAGAGTGGCTATATTTGCACGCTGTTGCCACACAACCCCTTATAAAAGTGATTCTTGCATAATAGATCCCCCTTTAAACATACCATATGTGAAAAAACATTCATGAGGGTACTTAATTTTCCATTTTTGGGAAATAAACTTTGTAAATCATCTTAAAGTTGAATAAATAATCTCTCCATTGATGTATGATTTGTTAGGATAGGACAAAATTTGGCTGTGATACAATTATTGAAAATCTGGAATTTTGAGTGTTCAAAAAATCTAAATACTGAGAAAATTGTATTGAAAGTTGTCTATATGAAGTGCTTAGCAATGCAGGATAATAATAAAAATGAGCTATAATATGTTTACAAAAGGAAATATTAAACTACTTCATGGAATATTATGTTTACATAATATTATAATGGTTTTGGGCAAGGCAAGTTTATTTATATAGCACATTTCATACACAATGGTAATTCAAAGTGCTTTACACAAACAAGAATATAAGAAACAAGAAAATAAAAATGATTGAAAGACTTAAAAATGATTATAACAGATTAAAATGTGTTAAATGGGTTTTAAAGGAATGAAAATAAAAGAAAGACATAATAGTGCGATCTGTTGGACGCAGCACAGTGCTCATTCAGTAAAGGCACAGCTAAACAGATGTGTTTTCAGTCTTGATTTGAACGTGCCTAATGGTGGAGCAGATCTGATCATCTCTGGAAGCTGATTCCAGCAGCAGATGGTGTAGTAGCTGAAGACAGATTTACCCTGCTTTGACTGATCTCTTGGAATTTCTAGTTTATATGATCTTAAAGATCTTAGTGAGCTGTTATGTTTGTATTCAGTGAGCATATCTGTAATGTATTGAGGTCCTAGGCCATTTAGGGACTTATAGACTAGTAATAATACTTTAAAATCTATTCTGAATGTAACTGGCAGCCAGTGTAAAGACTTGAGGACAGGTGTGATGTGCTCTGATTTTCTGCTTCTGGTCAGAATCCTGGTAGCAGTGTTCTGGATGAGCTGCCTGACTGTCTTTTTAGGAAGGCCAGTGAGGAGTCCATTACAGTAATCTACCCTGCTGCTGATAGAACCATGAACAAGTTTCTTTAAGTCCTCACTGGAAACAAAGCGTCTAATTCTTGCAATGTTTTTGAGATGATAGTATGCTAATTTAGTTACTGCTTTGACATGACTACTGAAACTCAGATCTGACTGCAGAATAACACCAAGATTCTTGACCTTATTTTTGTTGTTGTTTGACCCTTAAAGCTAAGGTACGCATTCACCTTGAGAACCCCATTGTTGTTCAAAAATGCAATGACTTTAGTTTTATTTTTATTTTACTGAAGAAAGTTTTGTCACATCCAACTGTTAATTAATGTTTAATTGGCATGAAAGAAAAATCTTTATATTTTTGACCCATGCAATGTATTTTTGACATAAAATCATCAGTGCTTCACATATTGTACAAATCGATTGAAAGGTAAAATTGTGTTGCTGACACAG
Seq C2 exon
AAAGGAAAGGTGAAAGAAGCTGCTCAGAGGTACCAGTACGCCCTGAAGAAGTTTCCTCGAGAAGGTTTCACCGAGGATCTGAAGACCTTCCGTGAGCTCAAAGTGTCCCTGCTGCTCAACCTGTCCCGCTGCCGGAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(15.2=38.7)
A:
NA
C2:
PF134141=TPR_11=PU(23.5=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]