MmuINT0156872 @ mm10
Intron Retention
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105914892-105917060:+
Coord C1 exon
chr11:105914892-105914983
Coord A exon
chr11:105914984-105916913
Coord C2 exon
chr11:105916914-105917060
Length
1930 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTCGTTTGTACCCATTAGAAA
3' ss Score
4.11
Exon sequences
Seq C1 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq A exon
GTGAGGGCGGGAGGAACTGCTTTTTACGTGTAGAATCTTGAAAACTTGAAAGTTTTCATTCTTTTCTGTACAGGCAAAGTAGAAACTAATTGCCTGGTCCTGGACTCCTAATTTAGGGGTCCTGAGGTTTTTTTTGCTTTCCTGGTAAAAGAGCAAAACATTCTGGTTTTAACTGGTCACTTAATAGTTCAGTAACAGGTTTTTCTCAGAATCTTCTAAGTGAAGAACTCATAGGGCAATTAAAAGCAAACTTATGTAATTTGGTATTTCTAGTTTCATTGATCTTAGTTTTCATACATACATACACGTTCCTGTAAACCCAGCACTTTGAAGGTGGGAGGAGAATATCAGGAACTTAAGGTCCTCTTTGTTTATAGAACAAGTTTGAAGGCAGCCTGGGAAAAAAAGTTCATAGTAATAATAGCATTTTTAATAAGATAAACAGTGATTATTATGCATTTGCTTAAAGTCACTCCCTGAATGAGAGTCTTTAAGAAATAGGTATCCTTAAACACTTGGCCAGAAGGAAATTCTTCGGGTATTCCATGTCAGTCTCCTCAGAGTGTTTCAGTTCATGGTGAGGAGACTGAAGGTAAATAACTCCAACCCAGTTTTTAGCAGCAGACATCCTTGAGATATTACAGATCTAAAAGATGATAAAATTACTGTAAAGCTCATTGTTTTATAAATATACAAGGTCCTAAGCAGAATTCTAGTTCCTAGGCATCCTTAGAGTACATCATGATTATCATGGCTTGTAGGAAGCTTGAACCTTGATCCAAACTTAATCATATAAAATCACATAAATTCAAAGATCTTTATTACTGTAGGGATCATACTTATGGACCTTTATGTCATTCTTAAGAATATAAGCCTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGTACCCTACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCTAGCAACCACATGGTGACTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAGAATATAAGCCTTGGCACAACATAACTTCTGCTATCCCAGGTCAAGGATTCTTGGCTCCTAATGTAAATAGGCACTTCCATAATTCTTCCCTTGGAAGACTCTACACTTCTCCTGATTAAAAGATGAAGAAAGGTAAATAACTGATGCGACCTGTAGCTCTACAGAGGGAGAGTCCAGGGGAAGCAGGAGCTACCACCTGGATCTTTCTGCACTTTATATACAGCCTTCCATATGCAATGTGTAAAAGCCGTTCAGTGTTTCTGTAGAGGATCCTGAAGTTGGTCAGATTTACTTCATCTTGGGGGAATGGTCTACAAAGTGAGAGTCACAAACTCCAAGCTTCTCTTCTCGCCTGCCACCTTACCTCCTGCCTGACCACAAATACCATGAACTGACACTATTTTCTACCATTACGTTAGAGAAGCCTCAGACCGTTCTAGGTCCTGCATGCTTCCTGAGGAAGAGAATTCTCTCTTCTGTGGGGCAGCAGGGTAGAACATCAAAGAGAAGCCACATAAGCCAAAACCTAGGGAGAAGCTATCACTGTGCAGTGTTGGGACCAGGAAGTTTATGTGTCCCAAGTAGAGCTGTTCAGGAAAAGAAGGAACTTCCCAGTGAGCAAGGTCAGCCCTTGAGAACAGAAACTGTTATGTGCATTTGCCAAGATTTTGTTTCTCTGGCTTGTGATTTTAGGTGTCCCTTCAACCTTCCTGTTCTTACCAAGTGAGTTTCCTATAAAAAAGACTAGATTTCTGCTCTCAGTACCCAAGGGACTTTAACCTTTAAGAGCAGACAGGAACTAGGGACAAGATCTCCTCAGCCTCAGCAAACCAACATTGTGCTCTTCGTTTGTACCCATTAG
Seq C2 exon
AAAGGGAAAGTAAAGGAGGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACCTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580:ENSMUST00000100330:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(18.8=37.5)
A:
NA
C2:
PF134141=TPR_11=PU(20.0=26.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCACCTCCAAACCAG
R:
TTCATTTTCCTGCGACATCGAGA
Band lengths:
222-2152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types