RnoINT0147524 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45910843-45913079:+
Coord C1 exon
chr3:45910843-45910934
Coord A exon
chr3:45910935-45912932
Coord C2 exon
chr3:45912933-45913079
Length
1998 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTGTGCTTTTTGAATCCTAGAAA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GAAATGCCGCTTGGGCGATGGCCACTTCCAAACCTGATATTCTGATCATACTTTTACAGAAATTGATGGAGGAAGGAAATGTGATGTACAAG
Seq A exon
GTAAGTGGCTTTGTCTGTTTCTGTGCTGCTGCAGCTGCTGCTGCTGCTGCTGCTGACCTGGGGCCGCCCCTCCATTTGGTATTGGATGCTGTAGCCACACAGGGCAGTAACTTTGTAAGAATGGGAGTTCCAAAACATTCCAGCGTGACCTCTTGTCTAGATGCCTGTTAATCTCCAGACGGCTGGGTCTTAATGGGAAAGGACTCCTTGCGTTGTTGCTAATACTCCAGGCGGTGGCTACTGCATGAAGGAGAGCCACTGCTGGGTCAGCTGGCATATCCCACAGGAAGGTCCCTTGGCTTTCCCACCTTTCAAGGTTCCAGTCATGGCCCTGGGCCTACTCAGGAGGAGCATAGCAAAAGACACCAAGAAGCATTACAGAAGGAAAGAGTGTTTAAGAGAGGATGGGGCAGTAACTACAGTCGGCCCCTGAGCCTGGCTGCCCAACTCTGAATCCTAGGTTCTGCTGGTAGGAGGAGGGATCTGAGTCTTAAAAGTTGTCCTCAGGGGTTGGGGATTTAGCTCAGTGGTAGAACGCTTGCTTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAACCAAAAAAAAAAAAATTGTCCTCAGAATTCCTCGCATGTTCTGTGGCATGCATGTGCCTACCTCATACAAATATATACAAAATAAATATTTAAAAACCATTCAGTGTCATCGTCCCCCATCCCCCCGCCTTTTACCTTTCAGTTTTTGGTTCTACACATTTGGGAGTTTTAAGTATTTTTAGTGATATTTTTATTTAATGTAGTCAAGTAATGCAGTCTCAGTTACTCAGGAGTAGTTAATTTTCTCAGCTTTTCCACATTCCCTCAGAAATGGAAAATGTGACCCACAGCTTCATTAATTTGACTTTAAAATTTCTCCAAAGAGCTACCAGGTTAGATCCGTGGTGGGTAGCCAGCGGCGTGCGCTTCAGGCTTTGCGGTCCGTGTAGACTAGCCTGCCCACTGCGGGTTCAGAGTCCCGGGTCATATGTGCTCAGGCGAGGGAGTGTGTCTGTGCCCCAGGAAAACCGCAGATTCACGCCTGCGTGGTGGGCAGCTACACCAGGGTTAGGTAGATGTGCCGACCATTTACATAGATGAGTATTCTTTCAAGACCTGTAATTAGGTGGAATTAAGAGACTGGGGCAGGGGCGGGGGGACCCAAGACTGTGACTGCTTTAATCCTTTTCACTACTAGGGAGCTTTATTTGGTATGTTCTTGTTTCTTTTGGTTGTTGTTTTTTTCATAGTAACAAATAACCAAGCATATAGCATGACCCGGCAGGGTTCCCAGCTTGAAGTCCGTTGGAAATTGAGTTCAGGGTGTATATTGTTGTGGCTTTGAAGTGGTTTTAATATGGATTCTGCTAGGTAATTATGTCAGAAATATCAAGCCGTTTCCAACAGGGTGCAGTTCCCGCTGTGCAGCGAGGCTGACTGAGCAAATGGATTTCCTGAGCCTGGAGAACGCTCTGCCTGACTCTCATTTTTTTTAAAGCTGGTTCTTCCGTGCTTCCAAAAGAAAGATTATCATTCTACACCGAGCTGCAGGTTTATCCACGAGGCGCTAGCTGCCTTAGAAACTACAGCATTTTTTTTAAAAATCTGGTTTCTATTATACTTGAAATTAAAATGTATTTCAGAGAAACATGGTTCTTGAAATAACACTGGAATTATATTTGTGAGAAAGATAATTGGATGCAGAAGATGGAGACTTGGCGACTTTTGCAGTTCGCAAACACCTTCTGGTTGAGCCATCTTTTTCCTTGCCGTGGTGTGAAAGCCTGTGAGGACCACGCAGGCTGAGAGCGTTCAGACTGTTCCGTGTCCTGGTTCCCACTGAGACACCTAGTCGTCATCCAGGCCTTTTCATGTGCCGTGAAGACTTTGTGTGAGGGTCTTCAGCATGGTGGTTCATCTGAGAGCCCCTGGGAAAGAATAACTCTGTGTGCTTTTTGAATCCTAG
Seq C2 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTACGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAATGAGCTGAGAGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(16.2=41.9)
A:
NA
C2:
PF134141=TPR_11=FE(60.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCACTTCCAAACCTG
R:
TGGTTTTCCTTCGGCATCTCG
Band lengths:
222-2220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]