MmuINT0156847 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59838975-59841085:+
Coord C1 exon
chr2:59838975-59839066
Coord A exon
chr2:59839067-59840938
Coord C2 exon
chr2:59840939-59841085
Length
1872 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GTGTGATTTTTGATTCGTAGAAA
3' ss Score
6.54
Exon sequences
Seq C1 exon
GAAATGCCGCTTGGGCGATGGCCACTTCCAAGCCTGATATTTTGATTATACTTTTGCAGAAATTGGTAGAGGAAGGAAATGTGATGTACAAG
Seq A exon
GTACGTGGCTTGTCTCCCGTGCTGCTGCTGCTGTTGACCTGGGGCCGCCCCTCAGTTAGGTATTGGGTGCTGTAGCCATGCAGGGCAGGAACTCTGCAAGAATGGAAGTCCCAAAACATTCCAGCATGACCTCTTGTCTAGATGCCTGTTAATCTCCAAACAGCCGGACCTTAATGGGAAAGAACTCTGTGTTTGAGGACAGTTGTTACTGATACTCCAGGCGGTGGCTAAGGTATGAGAGAGCCACTGCTGTGTCAGCTGGCATAGCCAAGTCCCTTGGCTTTTCCGCCTTTCAAAGATCCAATTATGGCCCTGGACCTAGTCGGGAGGTACATGACAAAAGCATTTACGGAAGGAAAGGATGTTGAAGAGAGGATGGCACGGTAACGGCAGTTGCTGGCTGCTAAGCTTGGCAGCCCAACTCTGAATCCTAGGCCCTGCTGGTAGAAGGAGGGCACTGAGTCTTATAAGTTGTCCTCAGAATTCTACACTATTCTGTGGCATGTGTGTGCCTACCTCATACAAATGTATACAAAATAAATAAATCTTTAAAAAGAAAATTAAAACCATCCAATGTCACCATGACCCCCCCCCAACCTTTTACCTTTCAGATCTTAATTCTACAAATGTGGACATTTTAAGTATTTTTACTGATATTTTTTACTTAATATAGACAAGTAATAAATTCTCACTCAAGAGATAGTTCATTTTTTCCAGTTCTTCCACGGTCCCCCCAAAATGGAAATAAGACCCACAACTTCATACATTTGACTTTAAATTTTCTCCAAAGAGCTGCCAGTTTATCTCCATGGTGGGTAGTGTGTGCTTCAGGCTCTGAGGTATGTGCAGGCTAGCCTGCTCACTGCTGGTTCAGAGGTAGTCATGGGTTATAGATGCACAGGCAAGGGAGTGTGGCTGTGCCCCAGGAAAACTGTAAATACACGCCTGTGAGTGGTGGGTGGCCACACCTGGGTTAGGTAGCTGGGTAGGTCATTTGCATAGATGACTATTCTTTCAAGAACCTGTAATTAGGTAGAATTAAGAGTATGGGGGAGGGACCCAAGCTTATGACTGCTTTAATCCTTTTCACTCCTGGGGAGATTTATTTGCTATGCTCTTGTTTCTTTTTTGTTGTTGGTTTTTTTTTTCATAGTAACAAATAACTAGGCATATAGCATGACCCAGCAGGGTTCCTGGCTTGAAGTCGGTTGGAAATTGAGTTCAGGGTGTATTCTGTTGTGGCTTTGAAGTGGTTTTAATATGGATTCTGCTAGGTAATTATGTCAGAAATATTAAGCCGTTTCCAGCAGGCAGCAGTTCCTGCTGTGCAAGGAGGCTGACAGAGCAAATGGATTCCTTTGGCCTTGAGAGTGGTGTGCTGTGTGTGGCTCTCATTTGTAAAGCCAATTCTTCGGTGCTTCTAAAAGAAAAATTACTATTCTACGTCAAGCTGCAGGTTTATCCATGAGGTTCTGGCTGCCTTAGAAACTACAACATTTTTTTTTCAATCCAGTGTCTATTATACTTGAAATTAAAATGTATTTCAGAGAAACATGGTTCTTGAAATAACAGTGAAATTAGATGTGATAAGATAACTGGATGCAGAAGGTGGAGACTTAGTGATTTTTTTTTGCAGTTCGCAAATACCTTCTTGCTGAGCCATCTTTTTCCTTGCTGTGTGACAACCTGTGAGGGCGATGTAGTCTGAGATCGTTCAGACTGCTCAGTGGCCTGGGTCCTACTAAAAAGACACCTAGCCATCCGGGTCCTTTTCATGCACTGTGAAGATTTTTACAGGGATGGCCTTCAGAATGGTGGTTCATCTTAGAGCCCCCTGGGAAAGAATAACTTTGTGTGATTTTTGATTCGTAG
Seq C2 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTGCGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCGTTCAATGAACTGAGAGTCTCCCTCTATCTCAATCTGTCGCGATGCCGAAGGAAAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(3.2=9.7),PF134141=TPR_11=PU(16.2=41.9)
A:
NA
C2:
PF134141=TPR_11=FE(60.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGGCCACTTCCAAGC
R:
TTTGTTTTCCTTCGGCATCGC
Band lengths:
224-2096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types