BtaINT0145016 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48350327-48355033:+
Coord C1 exon
chr19:48350327-48350493
Coord A exon
chr19:48350494-48354425
Coord C2 exon
chr19:48354426-48355033
Length
3932 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTCTCTCCATCTGTTTTAGGAA
3' ss Score
12.2
Exon sequences
Seq C1 exon
AGAGAAAAATTCCAGATGAAGATTTCATCATCTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTGAGTAAAATGATTGGAAAATTTCCTTCCTGGCTCAAGCTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GTATGTGTTTGTTTCCCTTTGGACCCATAAATTATTTCCCTTGAAGAGTGCTTAAACTGAAAAGTTTAGGTCCTTGTACCCTTAGTAGTGAGCTTTTCTAAATCTCTGCCATGTTTTAGAGCATTAGCAAGAGTAATTCCCGAAAAGAATATTTTGAGAGTAAGTGGTACAGTCTAGAGAGACCATTTTCAATATTTGACTGTCTTAGTTCAAATTCCCATCCCCATTGCTCTGGGTAAGTTTTAATAAAGTGTCCCTCAAAATAGCATGAAAGAAGTTCCATTTTTCTAGGCTTTGTCCTGAGGATAGCAAACAAATAGATCCTCTAACACGTTTACTGTTTGACTTTTGTTTTATATTTTCTATCATTTAATGCCAAGAAAAATCCAGTTCAGTGTACAGTGTAGAGTCAGATTTTCTAGTTCCTCCTTCTGTTTCTCAACTTTTCATAGCATGAAGATGGACTTTCTTCTGTATATACCTTTTTATAAGAAATATTGGCACTATTCAGGCTTTATATTAAATTTACTACCCCTGGGAGATAATTTTTTTTAATTACCTTCTCTGTTTACTCACTGATCATTCACTTTATGGCCTGGAAGAATGACTAGCAATGTTGGAACTGAATCTGTAGACACATGGGCTAAAGGGTAAATGAAATGACTCCACCTTCTCTACTATTCACGGTATACCTGAGTTGATATTTTCCATTCTTTACATATTCACACTTGGTTTGAAACAGGGTTTCTCAACTTTTTTCCCCCAAACCATAGCTTTTGATGAACATTAAAATCTCGCATTGGGACTTCCCTGGTGGTCCAGTGGCTAAGACTCCACGTTCCCAATTCATAGGGGCGCAGGTTCAATCCCCTAGTCTGGGAACTAGTTCCCATATGCTGCAATTAAGAGTTAGCCTGCCATAACTAAAGAGCCCATGTGCTTCAACAAAAGGCGGAGATCCCGAGTGATGGAACTAAGGCCTGGCACAGCCAAATAAATAAATTTTTTAAATATAATAAAAATTAAAAATAAATAAAATCTCACATGTTATACATCCATCCCACTATTTTGGTGCAACACCCTTATATCAGTAGTTAACATACAGAAAATAGCCTCAATGCCCTCCTTTTCCCATCTCTCAGGCACTTAGTATTTTTCCTATAGATTGACCAATTAAGGTCAATCTGCCTTCCTTGATCAGAAACTGTACTTCTAATCCTGACCATCAACTTGCAGATGTTCGTTATTAAGATTTCAAAGTAATTTGAGTTAAATTAAAATGAATCAACATAAATGCATCTTTGTAACTAAAAGTTATGTACTCTACCATTATTGGTCAGTAGCTTGATTGTTAAAAGATGAAGGGTGAATAAAATAAACTTCCAGGAACACAGTCTGACTAGTTTTACTAAATATACACTTAGGAGATAATATCTTTGCTTATATTTTTACATTATGCCATGTGCAATCTCAAAAGATGTTTTAAGTATGACTTGGTAGACTAGATGACTAACTTTTCAGCTGTGCCAAAGAACAGGGAAAGCATTATATTCACAAAGTTGAAAAGGCAGTGTCTTCATAAATCAAGGCCAGCAACTCATAACCTTTTTTTTTTCTTTTTTTTAGTTTTTAAATTATGAAAGTATGATAATGCATTTACAGGAGACTTGGAAAATACAGATCAAGGTTGCATATAGTTCCACTATATATTACAATTATTTTAAGTATCTAAATTAACCAGTAACTTTTTAAAATTATTTTTATTTACCTCTGACAATGAAACAATTCACAGATCTTTCTAAATGAACCCTCATAATTGATCATTCATTATTTCCACTAACATTTGTTAAGTATATCAAGTATAAAAGCTTATTTCTAAGAGCTGAGAATAGGACAGTGAGCAAGATGGACAATATCCCTGCCCTCACAAAGCTTATTTTCTAGTGAGGAACACACATAATAAGACAGATTAGCATATGTTAAAATTTAGGCAGTGTCAGTGCTATGAAGACAGATATAACAGTGAAGAGATAAATGGGGATGACAGTTATTTTACATAGAACAGATAGGAAAGGCCTCTCCAAGGAGCCTTGTAATGTGATGAAATCTGATTTACCTTTTTAAAAGATTTCTTTGGCTCCTGGCTATGTAGATAATAAAATGTAGGGGATCAAGAACGGAAGAAGTATAGATGAAAGGTGATGGCTTAGACTAGAGTGGAACAGCAGAGATCCTTTGAAGTGGTCATATTTGGACTATATTTTGAGAAGACGGTGATGGGCTGGATGTGGACGTGAGCAAGAGAAGAGGTTCAAGGATGAATTGTGGGGTTTTGGTGAGTAATTGGGTAGATGCTGGTTTGAGGAAAAGATCTAGACAGTTCCTTCTCAGTGGAGATCCTGTGAAGTCATATTTGGAGTATATTTTGAAGAAGATGATGATGGGCTGGATGTGGATGTAAGCAAGAGAGGAGGTTCAAGGATGAATTGTGGGATTTTTGAGAGCAATTGAATAGAGGCTGGTTTGAGGAAAAGATCTAGATAGTTCCTACTATTTGATGGTCAGGTCAGTGGTGATACTGTTTATCAACACAGGAAGGTTTGTGGTGGGGGGGAGTTTTTGTAGTTCTGATTTGGTCACAGTAAGTTTGTCTATGAAACATCCAAGTGGTAATGTTGACTCAGTGGAGATATAAGAAGAGAGCCCAGGAGAAATGACCAAGCTGGGGATATAAAATCAGGCATCATTCATGTATAGACTATATTTAGAACCATGGGATCCAGCTATTCTATTGAGTGAAGGTAGCCAGATAAGAGGAAGAATGGAGACGGGAGCCCTGAGTAGGCCGAGAAATGAGACAGGACCCAGCAGAAGAGGCTGAGTAGGAGTGGCCAGTGTGCTGAGAGGAAAATGAGGGGAATGTGTTATGGAAGCAAGCTGCAGGTAAGGGACTTGAGAAGCAAGACGTGATCACCTGTGTCAGAGACTGCTGAGAGGTTGAGGAGGATGAGAAATGAACCTCTATTATTTGGGAAGATGCAGATGACTGCTCATCTTAACAAGGACCATTCCAGTGAAGTGATGAGATTGAAGCCTGATTGCAGCAAATGGAGGAGAGAATGGGAAGGGAGGAATGAAATACAGTAAGCAGAGAAAACAAATTTTTTGTTACATTTTGTAAAACATGGGATCAAAGATACAGTAGTTAGAGGGAGGAATATGGAGTCCCATGTCTGTGTGATCCAGGAGAGAAGAAGAAATTGCTGCAGGAGAGGGAATGGATTCTTACAGGAGCAGAGTCTATAAGCAGATAAGAAAAGATGGATTCCAGAGCAAGAGAGACACCCCAAAGCCCTGTCACCTTCCCCCAGTATAATTTCCACGCAGATCGCCAGGGTGCCAGGCTTCCCACTGTTAAAAGATTTTTTCCTTTGGACTGAGGCATCTCCCAAAGACCCCAATTAAAATAAAGTCATTTTATACTTATGGCTGATTCACATTGTTGTATGGCAGAAACCAACACAACATTGTAAAGCAGTTATCCTCCAACTAAAAATAAATTTTAAAATAATTTAAAAAAATAATGAGGGATAGAAAGTCAAATTCCATATGACATTCTTTGAGTCTTTTGGCATTCTATTTTCTGTTTTAGGAGTGTTATTTAGAATATTGACCATTCAGTCGCTCCTAAAATACCCTTTATGAAGACTCATAAAAGTTATTTTAAGTCTCAATTTTAGGGAAAGTTGTGTCCCTTTTAGGCAACTAATAATGTTTTAATCCTTAGACACTAATATGTCATCATATCTCCCCCTTTTCTTTGGCCACTCAGAAGTTAAGAATAAATCCGTGGACCTTGCAGTTTATCACAAGAGTTAGGGGAAACTGAAGGTCTTTCTGTCTCTCTGTCTGTCTCTCTCCATCTGTTTTAG
Seq C2 exon
GAAATTACCAAGCTGCTGCCTTTCCATAGGATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCCTACATCCTGCACCGGATACATAGCAGCTCAGAGATCCAGAATAACATTTCTCTTAATGGCAAAATGGACAATACTACATTTGGCAAACTCAGTTCTCATCTCAAGACCCTCAGCCAAGGGTCCTATCTGTACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGTTAAAGAGCTCTAGCTACAAAGTAGTTCCTGTTTCGCTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACCCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAACGTGGCAGTGGCGTCTCTGCACCCACTGACTGATGAGCACATCTTCCAAGCCATCAACGCCGGCAGCATTGATGGCACGCTGGAATGGGAGGACTTCCAGCAGAGAATGGAGAACCTCTCAATGTTCCTAATCAAGCGCAGAGACATGACTCGCATGTTTGTACACCCTTCTTTTCGAGAGTGGCTTATCTGGAGAGAAGAAGGCGAGAAAACCAAATTTCTCTGTGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249:ENSBTAT00000005565:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.6=44.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development