GgaINT0143981 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2592959-2594533:+
Coord C1 exon
chr27:2592959-2593125
Coord A exon
chr27:2593126-2593925
Coord C2 exon
chr27:2593926-2594533
Length
800 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TCTTTTTTCTTTCTTTGCAGGAA
3' ss Score
13.55
Exon sequences
Seq C1 exon
AGAGGAAGATCCCCGATGAAGATTTCATCATATTAATTGATGGTTTAAACGAGGCTGAATTTCACAAGCCAGATTATGGTGACACCATCGTATCATTCCTGAGCAAAATGATTGGGAAGTTCCCTTCCTGGCTGAAGCTCGTTGTGACCGTCAGGACAAGTCTACAG
Seq A exon
GTACTCTGAGTCCTGGTAGCTGCTGTGTTGTCAGGATGGGCTGTGATAAAGAGTAGCTTAGTGTGTATCAGGCTTTGCTGGTGGTAGGTAAATTGCATCCCCTGTTGTCTTTACTGTGAGCTTTGGTTTTGCACCACCATTTTGGAGATGGGACTGCTCTCCTCAGTCTGCGCTGCCTGGCTCTGCTGTGTCATTTCTCCCCCCACTTTGCAGTGACAGAGCCTATAACATGAGAGCCCTGTTGGAAAAGCCTTTAATGATGTTGAGTTTTGCTCTGTAAGAACATCGGTGAGCTTAGCAAATGAGAGATTCCCTGGCCACGGTACCCAGCTAGACATCATTGCTGGGAAACAGTGGAACATGCTCCCTGTGACCTGCCCTGCTGGTTGGGTGCATGTCCCTGCTGATAGCAGCAGTGGGATTTCTCTGTTCTGTCACCTCCACGTCCTTCCCTTCCAATGGCTGAGATGGCAGCAGGAGGAATGGCAAGCTGCTGTTGGGTCGGGCTGGGGTAGGGATAATGAGGGCACCTCTCTGTGCCAGTTTCCCAGTCCTCCTCACGGATGCATTGCTAGGAACCACGTCCTGCATTTCTATTTCAGTCATGTCTCACACAGGAACTGTTTGATTATAGATGAGGTTGTGAGGTCCTGAGGGTATAAACCGCCTTCTTGTGTGCTTTCTCTGATGGAAAAGGTCTTAAAGGAGTCTCAGAGGTGCTATTGTAATACAAATCAATTTTACTTAATGAATAATAAGCATTCCCAGAATGAATATACTTCTTTTTTCTTTCTTTGCAG
Seq C2 exon
GAAATAATTAAGCTGTTGCCCTTCCACAGAATATTTTTGGATAGACTGGAAGAGAACGAAGCCATAGACCAGGACCTGCAGGCGTACATCCTGCACCGCATACACAGCAGCTCGGAGATCCAGAACAACATCTCACTGAACGGCAAGATGGACAACACCACCTTTGGCAAACTCAGCTCCCACCTCAAGACCTTGAGCCAAGGGTCCTACCTGTACCTGAAACTCACTTTTGATCTCATAGAGAAAGGATATCTAGTACTAAAAAGCTCCAGCTACAAAGTAGTCCCAGTGTCTCTGTCAGAAGTTTACCTGTTGCAGTGCAATATGAAGTTCCCAACACAGTCTTCCTTTGATCGGGTTATGCCTCTCTTGAATGTGGCAGTGGCATCTCTGCATCCTTTAACAGATGAGCATATTTTTCAGGCCATTAATGCAGGTAACATTGAGGGCACTTTGGAGTGGGATGACTTTCAGCAGAGGATGGAGAACCTTTCTATGTTTCTTATCAAACGTAGAGACATGACGCGAATGTTTGTTCATCCCTCTTTCCGCGAATGGCTCATTTGGAGAGAAGAAGGTGAAAAGACCAAGTTTCTTTGTGATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATCCCCGATGAAGA
R:
TGGGAGCTGAGTTTGCCAAAG
Band lengths:
349-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]