DreINT0160158 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22657809-22659357:+
Coord C1 exon
chr3:22657809-22657978
Coord A exon
chr3:22657979-22659078
Coord C2 exon
chr3:22659079-22659357
Length
1100 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TTTTTTTCTCTTGGCCTTAGGAT
3' ss Score
11.61
Exon sequences
Seq C1 exon
AGAGGAAGATTGCGTGTGAGGAGAATCTGATCATCTTGATTGACGGGCTGAATGAGGCAGAGTTCCACAAACCGGATTATGGAGAAACCATTGTTTCCTTTCTGTGCAAAACTATTGAGCGGTTTCCTCCCTGGCTAAAACTAGTGGTCACTGTCAGAACAACACTACAG
Seq A exon
GTCTGTATTCCATCCATCCATCCATCCATCCATCCATTCATCTCAATGCCTTCATCCATTTTTTTCATCCATCTACTTTCCTTCCATCCATCTCTCTATATACTTTTATCTATTAGTGTTCATCCATCCATCCAACCAACCATCTATCCCTCCATTCATTCAGCCACCTTTCTATCCATTCCCACCATCTAACATCCATATTTCCCAATCCATCTATCCTTTTTGCATGTACCTCGTCCTTCCATTCATCTGCCTGTTTTCCTAGCAGTTCTCAATCGCTCCATCTATCTGTTAATTTCCATTCACCTATCTCTCCATTCCTTCATCCATCACCCATTCTTCCTTTGATTTATTTAGCCACCCCTCCACCCATTCCTACTATTCAACTTTCATTTTTCTCATTCTATTTATTTTGGACTATCTACCAATCCATCCGCTCCGTCCATCTCCCCATATTCTATCTCCATTTCTCCATTCCTCTATCTGTCCATTTCAACATTTGTTCCCTCATCCATTGTTATTCTTCCAACTTCCCACCCATTGCCCCTCCACACATTTATCACATTTTTCATCCCATTCCTTCGAATAATTTCTCCATCATTCTACCCACCCAATCCTCCATCCATCTATCCATTTAGTTTACTCTAATGTATTTTTGTTGTTTTTAGTATGTGACTCATCCATTGCAATTTCACCTATCCCTCCATTCCTTCATCCATCTATCTATCAATCTCTCCACCCATCTTTCCGTAGATTTATTCAGCCTCCCCTCCAACCATTCTTACATTTCAACATTCATTTTTCTCATTCTATCTATTTTTGATTATCTACCAATCCATCCATCTTCCCATATTCCACTTCCATTCTACATTTCTCTATCGATCCCTAAATTCGTTCCCTCATCCATTGCTAGTCTTAAATCTTTCCCTCATTCCCTTTATTAAAACCCTTTACCTCCCTTTAACCATTTATGTATCCAACTAATATTTCCCGTATTCCTTCATTTGTCCATCCAACCACTCCATCCATTCCTCCATCAATCCATCTATTTAACTGAAATGTACTCTTTTTTTTATTTTATTTTTTTCTCTTGGCCTTAG
Seq C2 exon
GATGTGACTCGTCCATTGCCATTCCACCGTATCTCTCTGGATCGTCTGGAAGAAAGTGATGCAATTGATTCTGACCTGCAAGGCTACATCCTTCACCGGCTTCATGCCAGCCAGGAGATTCAGAACAATGTGGCACTCAATGGCAAGCTGGACAACACAGCCTTCACAAAACTTAGCGCTCATCTCAAGAGTCTGAGCCGGGGCTCCTACCTGTACCTAAAGCTCACGCTGGACCTCATTGAGAAGGGTTACCTTGTGCTCAAAAGCTCTAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(17.5=70.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTTCCACAAACCGGAT
R:
TCTCAATGAGGTCCAGCGTGA
Band lengths:
358-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]