MmuINT0156860 @ mm9
Intron Retention
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105725231-105729088:+
Coord C1 exon
chr11:105725231-105725397
Coord A exon
chr11:105725398-105728480
Coord C2 exon
chr11:105728481-105729088
Length
3083 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTCTCTCCATCTGTTTTAGGAA
3' ss Score
12.2
Exon sequences
Seq C1 exon
AGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GTATGTGTTTGTTTGCTTCTGAACCATAGATTGTCTCTCATGCAAAGAGCTTAAGCTGAAAAAACTCTGGATCCTAGTTCTCTTAGCTCTTCTTAAACCTAAGAGATGTGATCCAGAAAAAACATTCTCTCTGTATGACAAGTTCCTATTCCCATTGCTCTGGGTAAGGCTTCATAAAATGTTCCTCAAAATATCATTACAAGGCTAGGTATGTAATCCAAGCACACCTGAAGCACCAGTTCAAGATCAGGCTAAAAGGAGGGGGGGGAGGGAGAAAGAAAGAGAGGAAGGAAGGAAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAGCCTATCCTTTAGACTTTGTCTTGATGTGCTAGTGCAAAGGGGGAAATGCCTCACACTTTGAATTCCACTTCACGCTTTCAGCCTGCCATAGAGGCTCAGACGTTCCACTTCTTCCCTCACTTTTCTTTAAGTTCATTTTTTGGTAGTGTGGATGTAGTCTCTGTATGTGCCTTCCTCTAGCAAGTCCTGGCAACATTAGGACTTCAGGTTATATTTATTACAACTAAGAGATAAGGTTTTGCTTCCTGTAAATTATCTTTCCTACTCATTACTAATAATTTAATGGCCTGAAAGAACCAGGAATGTGTGCAAAAAACACATTCTGTAAAAAGTACTGGGCTAAGGAGTTAGGTTGTAGTTCCCACTCCTGTGTTCATATGTGGTTTGGAACAGTGTTTCTCATCTTTAAAAAAAAAAATCTCTCCTTGATTAAGGTCACATAGAATATATAGTCATTCCACTATTTTGATATAGCCCACTTATAATAACTAATTCATAGATGAGTCAGATTAAGTCTCCCCCTCCCCCCTCCTTTCAGCTTTTATTATTATTCTTATATATTGGCAAATTATATCTACTGTCCTCTTGTCAAGAAGCAGTATCTCTAATTCCATAACCTTGCAGATGTTTGCTATCATTCTGCAGGTTATTTGGGTCACAGTCTAGATCCACATAATGATCTTTACAGCTAAATTACATATAACCTAATTAGTTGGTAGTAGCTTGGTTGTTAAAATATTAATAGGAAAGATCTACAGGAACAAAATCTTGTGTTTGGTTTTGTTTCTTGGTTTGTTTTTATTTTCATTTTTTTAAGAAAAAAGAAAAATAAATTTCACTGGCTAACTCCTAAGCTGGCCTCAAACTCATGATCTTCCTGTCTCAACCTCCTGAGTATTGAATGTATAGATGTGTGCCACCATACTTAGCTATGACCTCTAATTTTGATATTTATGCATACGCAGTATTAATGTAATATCTGTTCTAACATGATGACATGTGTAATTGAGGAAGAAATGTTAAATGTCTAGGAAGGTAGAGCAGAAAAGCCGTCATTTTTCAACTGTGCTAAAGAATAGACAGAGTAGTGTGCATAGTCCAGATTTTATAAGTCCAGATTTCAGTGACTTCATGGGTAAAACCTGCAGTAACTTCCTAGATACTGCACTTTCTTTAATGAAGAGTTTCTAAGAATTATTTTCCTCACAAAATCATATGTAATTTTCCATTACTTCTATAGACATTTCATGGATTTTTAGAGTATGTCCAGTAATGTCCTAATACTTGAGGAATCAGTAGTAAATAAAACACTCAATGTCTCTACTTTTGTAACACTTTTTTAGTAAGGAACATAAACACAAAAAAAATAATTAAGCATATTGTGATATTAGGGGTAATATCATGTCAAGTACTTTGAAGAAAAATAAAATAGTATAAAGAGATAGAAATGGTTGTTTTGGGTAGATAGGAGAAGCCCCTCTAGGGAGCATTTGAAAGTGATGAAATCTGATCTACCGTTTTTTAAAGCTCTATCTTCTGCTTCTGAACATCATAAAATACAGAGGATGGAGATGATAAGCAGGAAGGGGGTGGAAGTTGATGGTATCTTAAACTAGCCATTAGAAAATATCTTGAAGGAGAATAAAAAGCAGTTGATTGGCCAGGTGTGATGGTTCATACCTGTGATATCATCATTTTTGAAGGCTGAGGCAAGAGAGTTAAGAGTTCTAGACCTTCTAAGCTACATAGAAAATTCAAAAAGAAAAAAGACTTGATGACAGACTGAATGTGAGTATAAGCAAGATATCAAGAATGAATCCTGGGGTTTCGTGAGTATGTGAACAGATGCCATCTTCAGAAACAAAGTTCTCCCAGATGCCTTCAAGGATTTAATGTCAGGGTCAATGGCAATACAGTTAATTTGTTAACAGAGGGAATGTCTTGTGATAGAGTATAAAATGAGATAATTCTTATTTAGTCACATTAAGTTTATCTATGAAACAACAAAGTATAAATTGCTTAGTAAACTAAGATACAAGGTGAGATCTCAGAGGAATTAAGTAATCTGGCAAAATAGATATTTAGAACTGTTTTTAGAGAGTGGAAATGAGGAAGAAGGAAAATTAATAGAGACCAGAGCCTGAAGTGGGCTAGGAAATGAAAGGAGCTAGTAAAAGAGGCTTGGTAAAACTAGTCAGTGTGATAAGAAAATGAGGATGTGTCTTAAGAGCAGGCTGCTGAAAATGATTCCCCAGAAAGCTGTGGAAAGATGCTGTCAACAGTCAAACACTGCTGAGATTCTGAGAAGATGGAAACTAAAGCTAACTATTGGATTTGCCAAGGTTAAGATATTGACAATCTTGGCAGTAGCCATTTTTAGTGAATAGGTAAGGTTTCAGTGAAGCCAGAGTATGAGAAATAAAGAGAATTCGAAGAACTTCTTTGATTATATCCTCACGTACTCTTTACAAAGACCCATAAAAAGTCTCAGTATTGGGAAAAGCCATCTTCTTACTGTGTGCATAATTTCCTTTAGTCTATAGATATCATGATTAATATTATTAATTATTAAGAATATCATTAATATTCTTCTTTAGCCACTCAGAAATTCAGACTGAATTCTGAACCCCATAGTTATAAGAGAGTTAGGGGAAACTGAAGGTCCTTCTGTCTATCTCTATCTCTCTCTCCATCTGTTTTAG
Seq C2 exon
GAAATTACCAAGTTGCTGCCTTTCCATAGGATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCTGCACCGGATTCACAGCAGCTCAGAGATCCAGAATAACATCTCACTTAATGGCAAGATGGACAATACTACATTTGGCAAACTCAGTTCTCACCTCAAGACCCTCAGTCAAGGGTCATATCTATACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGCTAAAGAGTTCTAGCTACAAAGTCGTTCCTGTTTCGCTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACTCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAATGTGGCAGTAGCCTCTCTCCACCCACTTACGGATGAACATATTTTCCAGGCCATCAATGCTGGGAGCATTGAAGGCACACTAGAATGGGAAGACTTTCAACAAAGAATGGAGAACCTCTCCATGTTCCTCATCAAGCGCAGAGACATGACTCGGATGTTTGTGCATCCTTCTTTTCGAGAATGGCTTATCTGGAGAGAAGAAGGAGAGAAAACCAAATTTCTCTGTGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-Tanc2:NM_181071:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(14.0=55.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: