BtaINT0145399 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15848779-15850136:+
Coord C1 exon
chr26:15848779-15849037
Coord A exon
chr26:15849038-15849913
Coord C2 exon
chr26:15849914-15850136
Length
876 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTACTTTATATAATTTCCAGGTC
3' ss Score
9.1
Exon sequences
Seq C1 exon
GATCTTCACACTCTATAGCAAATCACTACCACTTGATCTGGCCTGTCGAGTATGGGATGTATTTTGCAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGAATCCTCCGATTATATGAAGATATTCTTCTACAGATGGACTTTATTCACATAGCACAGTTTCTAACTAAATTGCCAGAAGATATCACATCAGAAAAACTGTTCAGCTGTATTGCAGCCATTCAGATGCAGAATAGTACCAAAAAATGGACTCAG
Seq A exon
GTAGAGTGACATTTTCCTACTTCTAACAGATGTACTAAAAGTTTGTTTTTAATTAAAAAAAAAAAGTTAACTATTTGTCAAATGTTAGTGCTTAAGTTTAAAAAAAAGCTTTAAAAATAATTTTTGACTTTGAAAAAAATATTGCTTCTCTTTCACCTCTCCAGACCTATGGCTTTATTTTTTATGTAAGTCCAGTAATATTTTGAGTTTAGTGAAGTGCAGCCTACAATAGTCATGTATTTGCCAGGGTAATTATATAAGCACCTTGGTAGTTCAAATAGACAACAATTGTATTAAATACCTGAATGTGTACTAAGGGTTTGCAATAAAAAGAATGTAATGTATGATTCTGACTTTTTAGATGCTTAATCTTGTTAGGGAAGCAAATATATTGACAGTCTAAAGTTATATGACATAAAAAATAGTGTTAACACTTGCTTCATGAATGATGGACAGTAGGCATAAGTTCACAGTTTTATTGCTTATGAAAATGAAAATATAAGAATATTGGTCCAGTCAATGTAAGGCAAAAACCACTATATTATAAAGTAATTAGCCTCCAATTAAAATAAATAAATTAATTAAAAAAATAAATATTGGGAAAATGCAAAAAAAAAAAAAAATGAATATTGGTCCAGGAAATGTTTTGTTACCTAATAGTAATTTTATAATATTGGAAAGTGATGAAAACTGGAATCTAACTGTCTATCATAAAATTGGGTTGAAACAAACAAGAGGATTTGAGAATGACTCTTTCAGAGAGCAAAGTTATGTATGCTAAAGCTTTTTCATGTTAATAAACTATAGATTTTAAAATCTCTTTAATCTGCATGGTTGTTGTTTTTAGCATTAATATTTACTTTATATAATTTCCAG
Seq C2 exon
GTCTTTTCATCTGTGATGAAGGATATTAAAGAAGGAGACAATAATAGTCCAGCTCTGAAAAGCTAACCTTCAAAATTAACAAAATAATTGCAATATAACAAATGTTGTTTGATAAAAGTTTTCATTTCCTATGTAAAAAGCATGGTAGAAAATGCTGAAGAAAGCTAAAAGAATCAAGACATGGAAAACTACTGATTTTGAATTCCATGGGGCTGAAGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693:ENSBTAT00000012783:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.9=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGATGGGGAGGAATTT
R:
TCTTCAGCATTTTCTACCATGC
Band lengths:
356-1232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]