GgaINT0040083 @ galGal4
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19642416-19645269:+
Coord C1 exon
chr6:19642416-19642674
Coord A exon
chr6:19642675-19643577
Coord C2 exon
chr6:19643578-19645269
Length
903 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTATTAAATCTGTTTCCAGGTG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATTTTTACACTCTACAGCAAGTCATTGCCACTTGATCTGGCCTGTCGTGTCTGGGATGTTTTCTGTAGAGATGGGGAAGAATTTTTGTTTAGGACAGGGTTAGGAATCCTTCGGTTATATGAAGATATTCTCCTACAGATGGACTTTATTCATATAGCACAGTTTCTAACAAAACTTCCAGAAGATATTACATCAGAGAAACTTTTTAGTTGTATTGCAGCTATTCAGATGCAGAATAGTAACAAAAAATGGGCACAG
Seq A exon
GTGAGTTGGATGTATATACATATGAAAACATGCTCATGTCTGCACATACATACATGGGGCACTTCTTTTAGTAACTATGCTACACGTCTGACTTCTAAGCAATAGGTAATACTGTTCATGTGACATTTTGTTTTTAGACTTGTCGCTGATGGGAGATGCATCTTGGTTGTGTATTCAAACAGAATCTCAATTCTTGTCATTGAGATGGCTACTTTTTTCCCTCCTCTTGGAATACAAATTCAGCACTGCATATTAATTTGGGGAGCAATAAAGTAGTTGTTAAATAACCCTAGTTTTTAGTACAAAATGCTATACTGTAAGAAGATGAACATGTAAACCAAATTCTATTTGAAACTGACTCAATATAGTCTAAAGGGAATTGTAATAAGACCCAACTGAATAAAAAGGGAAGAAGAAAATCTCTTCAGACAGCTTTGTGGTGGGGCCTTTAAAATAATTCTTCACCTTCTGTTCCCCGTATGGGAATTCCTCCTAGTTTTGATGGAAAATACCAGTGTGACAAATAATTGGAGTTGCTGCTGCTGAAACCTTCAGCTAAGTACAAGGGTGAAGTAGTCAGGTTTGGCAGAAAAAGTGGCTTGTGTTCTTGGCTCAACTCCTAATGCCAACTGAGATGTAAGGAATAGCTGGAACATAAAAGAGGAGTTGGGAATTGTTTACCTTGTTGTATCTTCCCATATCCATGAGATTGGCTTTTCCCAATCATTTTAATGAGTTTTTCCTAAAATGGTGGAAAAAACGTTTTAGATTTTGTAAGCATTTAGAAGTAATTGACTCTTCCTTTCTGGTGTCTCATTTTAGAAAGATATTTCCACGCTAATATCATTGTGGTTAACTTTTTTGTAGGACTAACTTTTCTATATTTATTAAATCTGTTTCCAG
Seq C2 exon
GTGTTTGCCTCACTTATGAAGGACAACAAAGAAGGGGACAAGAACCATAGCCCAGCACTGAAAAGCTAATCATTGTAATGTTGAGGTCAATTGAAAATGTGGAAAACCACTTGATGACGAAGGACTTCTCACATCACTTCTATATCACTATAGAAAATTGTGAAAAGTGAGAGAAAAATGATACAGCTCTCAGTGGTATAACGAACTGATGAAATCTTCGCCCTTTTGCCAGTATTAGCTTTTTTGATGGGAAGATTTGTTTTCACGCAGAATACTAAAACCTATGAAACTGAGAAGTAGGGGAGTTCATATTTAATACTTTAAAAGAATCAGCTCAATGCAATAAACATTTCTAGTAACTTCTGTTGGTACTTCAAAAAAATTTTTGAGGCATAACTTTTTTTTACAAATACCACAAAGGCACTTTTTTGGGGGATGAGGGAAATGCTGAATCTGAAAAGCTCCAAAACTGCTATCCAAACCAAATGCTTTGGTACAAATATTACCTCCAAAACGAACCGTTTAAAAGTATTGAGGACCAAATAAGGTTGTTTGGTATGTTTATGCGGAAGATGGTTATGATTTTGAGAAGGGGTATTGTCTTATTTACTTTTTTTTTTTTTTAAGTTGCAGCTTCATTCTTCAGTCTGGGCAAACGTAATTAACTCAGGAACCGTAGAAGTATTGTGCCCAAACCTGTTAGAGCAAAAATCACGCGAACTTTAAACAGTGGTAAGACCAGGGCTATTATTTTCAGATGTACGGCTTTCAAAGTGAGTGGTGTTAAGCATTTGTTTTGGCGTACTGGTTGTGCAGCTTCTTGAAAATGGGGTGGGTATTCTGTGAAAGGGTTTTGCCACCAGAAGTTTTATCTTGTTGAGCCATTGTTAGCTAAGATACACTAGTATGTGATGGCAAACACTACAAACTGACAAACTATCTGCAGAATCTGTGTTGGTTTTTAACACTTGAGAGTCATGGAGACACTTCAGGATAGTGCAAACAGAGTATTTCTTGAAACTCTCTTATTAGTGTGCAATACTGAAAGCTGAAAAGCATATGGTTTAGAGATTCTTAATTCTTTAACATCATTTAGCTGTGAGAAATGAGGTCATGCTGTATGTGTCACAGTGGCTGTTTTCAATGCTTTCTATTCTCGAAGATACTGTACAACAACTTCATGTTTGTGGGGGTTGGAAACCTAAAATGGATAGCACTGCAGGTGAGGAGCACTTGCACTCTTTGGTCCATTTTTTGCTAATATTTACTGTAAATAAATTCCTTACATGTGGGTTTTTGTAACTGGTCCCTCTGTGGAAATCAAGTCCAAACTACCATTATTATGTACTTTTAAGTGCGGGAGGCTCTCGGTTGTCTGGTGTTTAAAGCGGAGTCTACATAATTGGGGTGAAGATTTAGTGTGGTGTAATTACGTTGCTATCTGGTTTAAAACTACATATATACTATTCATAACATTACAATTTGAAATCTAAATGTCAGACTTTTTCTTAACTTATGTATTCACTACTTAAATTGGATCCAATTTGTCTTATATTTTTGCGTTATCTTGTACAGTTTTCTTACTTTTCAAGTATAAATCTGTATATAACTGTAAATAGAACGACGAAGCCTTCCTTTAAGACCACTAGTAACAATTCCTGTGTAAATAAAACTTACAGCAGAAATGCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.318
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATCTGGCCTGTCGTGTC
R:
AGTCCTTCGTCATCAAGTGGT
Band lengths:
354-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]