DreINT0160536 @ danRer10
Intron Retention
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23216098-23217689:-
Coord C1 exon
chr17:23217431-23217689
Coord A exon
chr17:23217308-23217430
Coord C2 exon
chr17:23216098-23217307
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TATATGTGTTCCTCCTGCAGGTT
3' ss Score
11.75
Exon sequences
Seq C1 exon
GATCTTCACTCTGTACAGTAAGTCTTTACCGCTAGACGTGGCGTGTCGTGTTTGGGATGTGTTTTGTCGAGACGGAGAGGAGGCGTTATTCCGGACGGGATTGGGGATCCTGCGGTTGTACCAGGATGTTTTGCTGCAGATGGATTTCATTCATAGTGCGCAGTTTCTTTCCCGGTTGCCTGAAAACACTCCTGCACACACACTCTTCTCCTGCATCGCAAACACACAGATGATCAGCAACAACCGCCGCTGGAACCAG
Seq A exon
GTGAGAAACACACTTGTACTATTTTTTTTTAAGGAGTTTTCAAGTGTCAGGATTAAAAAAAAGTAAATGGCACTAAACAGTTGAAGAACCTTCAGTGTGCTCCTATATGTGTTCCTCCTGCAG
Seq C2 exon
GTTTTCTCCACTCTTATAAAAGACAGACTTAAAGAAACGGACAAAATCAGCAACAGCAGCAGCAACAGCAACAGTCCAGCCTTAAGAAGCTGAAAGCAGCGGCCTCGGAGAATGTTTAGAGACGTCACTCAGCACTTTGACCTTCAGCAGTGTGTGCCTGACCAGGACATACAAGTACTGTCCCGTTTGAAGAAGCTCACGCTGGACCCCGAGTCCTGTGGAGGAGACGTCTCTTCACTAGCTCTCGGCAGCCTGCTTGTGCATATGTTTGAGCCTGAGAATAAGACAAATGTGAGTCGGGTGACCGTATAATGTGCCAACTTTGTCAATGTTACTTTTGTAATGTTGTAACTATGAGAAAACAAACTAATCTGAAGCGTTTACACACACACACACACAGACACAGAGAGGCCAAACGCCAACACTCCCTGTTATGAACCAGCGTTAAGCCCTCTGTTATAAACACACAACATAAACCTGCGGTAGCCTTTCATTAGCACATACCAAATCTGTCGTTAATGTGTTTGTTATGCTGTTTCGTTCAAGTTAGCTGAATTTAGCTCATTTGCTAACATATTTGCCATTGAGTTTTCCTCAGTGTCGCAAAAACACGTCAAAAGTGGAGCCAAAAGTGATAAATGAACATATTATAATATCTTTAGACCAGTGCTGTGATGTACTAGCACTCCAGATTTGAACACTTATAAAAAAATCAACTATATTAATTGAAGTGAAACATTACAAATGGACACAAACTAACTAACCAGCAACAAACAAGAGATCAACTTTTGCACCTTCGACACTCCAAATGAATGAACCTTGACATTTCCAGATTTCTTTTTCAGTTATTTAATGTCTTTATTTTATTTATGAATCATTTCTCTTGCTTTTTCTCTGTCTCTTTTGTTTACTTCCTCACTGTTGTACAGTTTTCTTACATAACCGTTGTTAATGAACATTTCTGGTGTGAGGGCTGTAGTGTAGATGTGGAAAAATCGCAGTATTGGAGACTTGCCGTCTTCCTGTCTTTCTTCCTTTTTTTATTTTATTTTATTTTAATTATGAAATGTAATGTTACACAGAAGTTGATAGAAAGTGTGAACCGAAACATGGGGTTAGCGTGTATTTAAGAGAGCCATTCGCAGATTGTTGGAAAATGTGTTTTCCAATTCTTTGGATTTAAACATTAAATTTAATGAAATCCCTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237:ENSDART00000055756:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.433
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTGCATCGCAAACACA
R:
CGTGAGCTTCTTCAAACGGGA
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]