BtaINT0145405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15840360-15842812:+
Coord C1 exon
chr26:15840360-15840440
Coord A exon
chr26:15840441-15842723
Coord C2 exon
chr26:15842724-15842812
Length
2283 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TATCTACCTGGCAAATGCAGGTG
3' ss Score
4.84
Exon sequences
Seq C1 exon
AACTTTATGAAATCTTCCTCTCAAGAGCAAAGGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATGTAGAAG
Seq A exon
GTGGGCTATTTTTGTTGTTAATAGAAATTTCTCAAAATCCAGGTGCTGAGATGAGTGTGATTTTTTACAATATGCCAGGAACTGCAATAATTCTTTACATACATTATCTCCTTTAATGTTAATAACCCTTTAAATAGATGTTATTATACTGAATGATATAAGAGGAAACTGAGGCTCAGAATAGTTAACTTGGGAACAGTTAAGCTGTGATGTAAACCCAGGTTGTTGGACTCCAGAGTCCAGTTTTTAATCACAACAGTAAAAGTAATGGGGTGCAGTATTTTTAGGCCACCTCTTACTTAAAAGATTGATGATGTTTACAGCTCGCTTGTGACCTCCCCTAAAGAGGAAGCATGCTCTTCTCTCTTATGCTGTTGGATTATCATTTCAATTTAGTCACTAACTGAGCTAGGTTTGGCAGGATTGCAGCTTTAGATAGACTTAGTTCATCCTGGGTTTCAAATTTGCTGAAGGAAAGAACCACAGGCTCCCTGCTTTAATCAGACATTCTCCCAAGGGCCATGTGCCTATGGATGATTTCATTATGTCTTTCCAGCCTGGCCTTCTGCACTACACTGAACCCTGCAAAAGTCCCACAGAGGAAAACCAGATATACATTCAGGCTTCTCCAAATCAGTCTTATTGGGCCATGAAAAGCTCTTCTGCATTCTTTCCTCAAGCAGAGTACCTTCATCTCTGGCAGGCTCAGTCCTGAGCCCGTTCCCACACTTGGCGGATGCCCCTAGGAATAAAAGTAGCCACTGGAATCCACTTACCTGGGAAAGGCAAGGCAAGACTCTTCTCTTTCTGAGATTTAAAACCTTTACAACTCTCGGTGCTCACAATTCTCTTATGCCTTTTTTTTTTCCCTTTCTTTTCTGGCCACACCACATGGCTTGTGGGATTTTAGTTCCTTGACCAGGGACAGAACCCAGGTCCTCATCAATGAGAGTGCAGAATCCTAAGCACTGGATCACCAGGGAATTTCCTCTTATGCCTTTTTAAAACATATGGTATTTGAAATCTGTTTTTTCCTAGTAGTTATTGCAGGAGTAGTAGTCTTTCCCCTCCCTTTTATAAAACCTAGAAACAGAAATCTTTTACCATAAAACTTTGTGATAAATGTATAGATTCTTTCTTCATATTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGTGACCCCATGAACCGCAGCACACCAGGCCTCTCTGTCCATCACCTTTCCCAGAGTCCACCCAAATCCTTGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTCTCGTCCCCTTCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCACATCAGGTAGCCAAAGTATTGGAGTTTCAGCTTGAACATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAACAGCATCGATTCTTCGGTGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGACAAAGTTATGTCTGTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTTTGGAGCCCAGAAAAATAAAGTCAGCCACTGTTTCCCCATCTATTTCCCATGTAGTGATGGGACTGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTTAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTATATTTCCTCTTCACTTTCTGCCATAAGGGTGGTATCATCTGCATATCTGAGATTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGCCCAGTGTTTCTCATGATGTACTCTGCATATTAAATAAGTAGGGTGACAATATACAGCCTTGACGTACTCCTTTACCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGGTTTAAGGCTATAAGTTCCAGGAAAAGCTGTGATGTTTCTTTAAAGTTATTGATTATTCAGCTTTTAACTTTCCTTAAGTAACATACATGGTGTGTGTGATCATTCTGTGTTTACAAGACTGATCTTGGTATAATGAGTAATCATTTCAGTTTTATCTACCTGGCAAATGCAG
Seq C2 exon
GTGTATCTGTTGCTGATCGAGAGGCCAGTCTAGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693:ENSBTAT00000012783:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]