GgaINT0040078 @ galGal3
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
NA
Coordinates
chr6:21161273-21161967:+
Coord C1 exon
chr6:21161273-21161353
Coord A exon
chr6:21161354-21161872
Coord C2 exon
chr6:21161873-21161967
Length
519 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTTTTGGTTTTGCTTGCAGATG
3' ss Score
10.69
Exon sequences
Seq C1 exon
AACTCTATGAAATCTTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAG
Seq A exon
GTAAGACCTTCTGAATGCTAAACAGATTCCTATTTATTTTTACAAACACACAGTTTCACTAGTTTGTGTGCAATTGCAGCATTAGGAATGTTTGTTAAAATACTCTGGGTCGTTTCCTACTTGTTTTTGTGTCAGGCTGCATTCATTAAAAATTTAGATTAAATAAAAAGGAAGAGAACTCAAGGCCCAGTTGAAATTCTTCTGGAAGTTCTTGAGTGAATGCTGCCACCTTTGCTGTGATTTAAAGAATGCCAGCCCTGGGATACAGAAAACTTGAGTCGTATGAAAGCTAACAAGGGCTCAGAAGGAATGTAACTTCTACAGCTCCTAACCAGTCAATTTTTGAAAACTTCCATGAAATCTCTGTGCATTTTGTTACCCTTAGTGTTATATATATATTTAAAGAATAAAAAACATTTTTTTCCCTTATATCATAAAGACGTTATGCATGTGGCAGTTTTAATCGGAAGCCTGTAGAATTGTTTTATCACTTTCAATGACTTTTGGTTTTGCTTGCAG
Seq C2 exon
ATGCTAGTGCATCTGTTGCTGATCGTGAGGCCAGCCTGGAGCTAATTAAGTTGGATATATCACGCACATTTCCATCCCTGTATATTTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]