HsaINT0163983 @ hg38
Intron Retention
Gene
ENSG00000108239 | TBC1D12
Description
TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr10:94507267-94510179:+
Coord C1 exon
chr10:94507267-94507347
Coord A exon
chr10:94507348-94510090
Coord C2 exon
chr10:94510091-94510179
Length
2743 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TATCTGCTTGGTAAATGCAGGTG
3' ss Score
4.72
Exon sequences
Seq C1 exon
AACTTTATGAAATCTTCCTCTCAAGAGCAAAAGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATACAGAAG
Seq A exon
GTGTGATTTCTTTTTTTAAATAAGAATTTTAGGATGAAAATTCAGATACTGAGCATGTATCAGAAGCTGTAGTAATCGCTTTACATATATCATCTTATTTAATCTTAACCCTTTCAGTAAACAAGGCTAGAAAAAAGACTTGATTTACAGAAAAGTTCATGTAAGTATCATCCTAAGACCTCTTAGCTATGTCAGCTATTTGTGGAGAACTAAAAGTATGTAAAAGGTAAAGAAGTTTATACTGGCAGACAGCAGCTATTTCATCATTTTTGACTCATTTTTATGAAGCATTGAAATTATGAGAATTAAAATTATAAGTATTCACTTCTGAAATATTTTTTCAATAATAAATGGTGAGGCTGGGCGGATGGCTCACACCTGTAATCCTGGCACTTTGGGGGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAAACCAGCCTGGACAACATGGCGAAACCCCATCTCTACTAAAAAAACAAAAATTAGCCGGGCGTGGTGGCAGGTGCATGCAATCCCAGCTACTTGGGAGGCTGAGGCAGGGAGAATGTCTTGAACCTGGGAGGCAGAGGTTACAGTGAGCTGAGATCACGCCATTGCACTCCAGCCTGGGTAACAGACTTCATCTCCAAAGAAAAAGAATAAATGGTGAAAATTGCACTTTAGTAGAAATTAATTGAATGTAATGAAGAGTTCTAGTCAGAAGCAGTGTCTACATAAATTACTGTTTTCTTATTTCCTGGATATGTATAATTTGCATGTGTCATTTAACTTTTTGGTCATTGTCTTTTTAAATATTGCTTCTGCCCTTTCTTGCCTGTTTTCCTTCTGGACTCCAATTACATGTATAGTAGACCATTTAACAGTGTTTCACAAGCCTCTTATACTCTCTCTTTTTTTTTTCTTTTTTTGGTGGGGGATAGATATAATTTTATATAATTGAAAAAAATTTTAATTCATCATATAGGGATGGGGTCTCTCTATGTTTCCCTGGCTAGTCTCAAACTCCTGGCCTCAAGCAATCCTGCCTTGGCCTTCCAAAGTGCTGGGATTGCAGGCATGAACCACTGTGCCTGGCCAATTCTTTTTCTCTCTCTCTCTCTCTCTCTTTCTCTGCTTCAGTTTCATTGATTTTTATTGATCCGTCATCAAATTCACTAATCCTTTCTTCTGGTTTATCTAGTCTGCTATTAAATCTAAATCTGTGTAATGGGCTTTTAATTTCAGATGTGCTTTGTAATTGTAGAATGTTCACTTGGTTCTTTTTATACATTCTGTTTCTCTGTTGAAATTCATCTTCCCATCCCATGTTCCTTCCGCCATCTTTTCCTCTTATTTTCTTTTTAAAATTTATTATTATTTTTTTCTCTAGCGCATATCAGCCAGATATTTTCTTTAACATATTTATAACAGATAGTGTCATTGCCTGTTAATTCCAATACTGCATCATCTGCAGGTCTGCCTCTGTCGGCTGTTTTTCCCCTTGTTTCCCCTTTAAAGTGGTTGTAAGTCACATTTTCTGCTTCTTTGTATATCTTAAATGTTTAAATTGTATGCCAGACATTGTATATAAAAAGAATGTAGAAACCAAAGCTGAGGTTTCCCCTGCAGAGTAAGCTGCTCTTTCCTGTTAGGCAGTTCGATTAAGGGCTTATCACCTCAATTCAACCATTAATTGATCTAGGTTGGGGCAAGGTTGTAGGTTTAGATAGACTTAGTTTATCTTGAGTTTCAAATTTCTTGATGGGAAAAAGTGTTTTTTTTTTTTTTTTTTTGAGATGCTCACCCTGTCGCCCAGGCTGGAGTGCAGTGGCAAGATCTTGGCTCACTGCAATCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGTCCCCTGAGTAGCTGGGATTACAGGTGCGCTCCACCATGCCCGGCTAATTTTTAGTAGAGACAGGGTTTCACCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCATCTTGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCACACCCGGACCAAAGTGTTCTATTTTGACTACAGGTAATCTCCCTCCAATGATATGCCCTCTCAAGACCTTGTGACTTTGGATGATTTTATTCTGCATTTCTAGCCCAGCCTTCTGCATTCAGAAAAGTCCCATAGGGAAAACCAGATACACATTCAGGGCTCCTCCAGATTCTTGTCTATCACATCAATTTTATTTGGCCATGTGTAGCTCTTCTGGTTTCTCTTCCTCCAACTAGGGTGACTTTGTCTTCGGCGAGCTCGATCCTAAGCCCATACCTAGACCTGGCAGATACCCCTAGGAAGAAAAATGGACACTGGTGTCTACTCACCAAGGAAAGACTCTTACTTTTCTGGAATTTAAATCCTATTGATCTCTCTGTGTCCATAGCTCTCTGATGATTTTTTAAATGTGATATTTGTAAATTTTTTTCCTAGTTGTTACCATGGAAATGATGGTCTGCCCATATCTTCTGTAAAAACTGGAATTAGAAATCCTTTACCATATAACTTTCTGATAAATGTATAGCTATTTTCTTTGTACAAGAGAATAACAAGTTCTAACAAAAGCTATGTGACATTTCTTATAATTTCTTGATTATTCAGCTTTTAACTTAAATAACACATGCTGTGTGATCATTCTGTATTTATAAAATTGGACTTGTTAGAGCCAAGTGATCATTTAAATTGTATCTGCTTGGTAAATGCAG
Seq C2 exon
GTGTATCTGTTGCTGATCGAGAGGCCAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108239:ENST00000225235:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains