MmuINT0157253 @ mm10
Intron Retention
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38907772-38911095:+
Coord C1 exon
chr19:38907772-38907852
Coord A exon
chr19:38907853-38911006
Coord C2 exon
chr19:38911007-38911095
Length
3154 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTATCTGTTTGGTAATGCAGGTC
3' ss Score
6.43
Exon sequences
Seq C1 exon
AACTTTATGAAATCTTTCTTTCAAGAGCAAAAGAACGTTGGAAAAGCTTCAGTGAATCAAGTTCTGAGAACGACACGGAAG
Seq A exon
GTATGGGGGTCTCCAAGTGAGAATCTCAAAACTCAGTTACTGAATAGACAGGTGGGATTTTTCTGCCATGTACCAGAAGCTGTGCTAGCTGACGTAAGGGCAGTGCCTGTTTAGTACATGATAGCACTCTGAGCTTCGGGAGGGGAGGAGGCTTAGAGTAGTGAGAAGCAAGAGGCTGGGCTTGAAGTCTGCTCTGTTTATCCCAAGTCCCAGGATTCAAATCACAGTGGTGAAGCTGATGGGCCGAGTGCAGTGTTATCAGACCAAGCTGTTACTACAGGCTGACGTTATTCACTCCTTCTGAACTCCTCCTTGGTACCTAGTAGACTGCACACAGTTCAGTTCTCCTGTGCTCTGCCCTGCTCCTTGTTCATTTGTTTCACCCATTACTCCCATCCTTACCTCTGCCTGGACAGTTAGTTTTCTTAATCACTTTGAAGATTTTTTCCTTGTATCAGATTATTAAATTTGTATTTTGATAATGGGGAATCATTTTCCTAATCTTATCACTTTTTGTTTTATTTGCATGCTTTCTTTCTTAAGTAGGTTCTCATTTGATTTAGGCTGGCCTTGAATTCACTCTGTAGCTGAGGACGACATTGAACTTCTGATGTCCTGCCTCTGTCTCCACGTTCTGGGACTACAGCTATGAGCTACTGCTTCCCGTTATGTGCTGCTAGGGATTGAACCCAGGTCTGAGCAAGCACTCACCAACCAAGCTATACTCCTAGCCACTTTTCCTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTTGGCTGTCCTAGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTTCACTTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGACTTCTCTTTTCCTTTTTTTTGTATTTATTACTGTATAGAAAGCAAGTTCACTGAGCATGGTGTCACAGAGCCAGGAGGAGCTTTTTGAGCTCAAGGTCATCCTGGTGGTCTTCAGAGTGAGTTCCAGTGTAATCAGGCTGTTACTCTGTTACTCTGTTTTGAAAAACTCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAGATAGTAATAATAGTAATAGAAAAGTCTTCTCTTCCCTTTAAGTAAAACTTTAAAATATATCTTTGAATAAATAAATAGAACTTATCTTATAGTGGTTGCCTGTGAGAAACCACTTTTTAAATTTCTTTTTTCCATTTTATGATAAGCCATTAGGAAAGGGAAATCTTACTGAGTAGTCAAGGAGAGGACTTGGTTTTGAGGACCATGGAAGAGTCATCTCGAAATTGGTTGGCTGTGCCGGGTGGTGGTGACGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTACGGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAAAAAAACAAAACAACAACAACAACAACAAAAAACCCAAAAAAGAAATAGGTTGGCTGTTTTAGTGATTTTCTGAAGAACTGAAAGTGCAAAGTAAGTGAACATGCATAGAATTATGACCCTCGAGGCCACTGCTCTGCACTGTCCATCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTTCCTTTCTTATTTATTTATAGATGCAGTCATATCATATGTAGTTCAGACTAGCATTGAGCTGTGAATTTGCTGCCTCCACCTCTGCCTCCAGGGTTTGCAGGTTATATTCCCATGCCTGGCTCAGTTTTCTATTAAAACAAGTTTTATGAAGTACCAAAATTATACAAATTAAGACTAGAAATATAACTCAGTGCTATAACAATTGCTCAGAGCCACAAACAAAACAAAAAAAATTAAATAAACTAAAATGGCAAGTGTATGAGAGTAGGTTAGGTAACTCACACCTATAATCCCCATACTTTAGAGGTGGAGGCAGGAGAATCGGAGTTCAGAGTCATTTTTAACTGTGTAGCAAGTCAGAGTACAGTGCGAACCACATGAGAACCTGTCTCATGAACAAGCACAAACAAAACTTTTTGTTATGGGTAAATAATGAAAATTATACTTTAGAATGAAGTAATTGAGTGTAATAGTTACGCCAGGGATGGTAAAATGGCTTGGTGGGGAAAGGTTTGCACTGTTAAGTTTGAGGGTGACTGTGATAATAGATCCCATATGGTAGAAGGCGAGAACCAACTCCCACAAGGTGTCACATGTGCACATACTTACACACACTACCTAGTTACTACCGTGGGAGTATTAGTCCGTCTTTATATTCAATAAGAATTAGAACAGAATTTTTTCACTATATATTTTTCTGATGAATGCATTTATGTTTCCTCAATAAAAGAGACTACATTTAAAGCTTGGTATGGGAGCATATGCCTATGATTTCAGTAGTCAGGGGGTGAAAGCCAAATCAAAGAGAGCTCTGTGTTAGCCTTGGTTACAGAGTAAATTCAAGGCCAGCCTAGATTACATGTGAAAGTGTTGCCTAGTGCATTCACAGACACACAGACACACAGACACACAGACACACAGACACACACACACACACACACACACACACACACACACACGGAGAAAGGGAAGGGAGACAGGGAGACAGAGAGGGGGAGAGAGAGAGAGTATGCAGTGGGAAGGAGAGAGGAAAGTGAGAACAACACTGTTTTGCTGTCCGTGATTGCTTGTCTATAATCCCAGAACTCATAAGGCCGAGGCAAGAGGATTGATGGGAGTTTGTGGTTAGCCTGGGTTACAGAGTGAGATCCTGTCTCGAAAAAGGAGAAAGAGGACTAAAGACAGCTCAGAGAGCTTGCCTAGCATGCACAAGGTCCTGATGTCAGTCCCTAGTACCACATAACTTAGGTATGCTGGCACAGGCACTGAGATAGTGCTATTTCAGGAGGGTAGAGGCAAGAAGATGGGAAGTCCAAAGCTACACAGGGAATTGAAGTTTGAAGCTAACCTAAGCTACCCGAAGAAGCTAAGTCCTAAATTCTAGGGATGGGACATTCTTGATTATTCAGCTTTTCTACTTACTTTAACAGGCAGTGTCCTCAGCCTGTTTAAATTTTATCTGTTTGGTAATGCAG
Seq C2 exon
GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720:ENSMUST00000037302:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types