DreINT0160558 @ danRer10
Intron Retention
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5399291-5399850:-
Coord C1 exon
chr12:5399770-5399850
Coord A exon
chr12:5399377-5399769
Coord C2 exon
chr12:5399291-5399376
Length
393 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TGTTGTTGTGTTTGTTACAGTGG
3' ss Score
8.62
Exon sequences
Seq C1 exon
ATTTGTATGAGATCTTTCTGTCGCGGGCCAAGGAGCGATGGAAGAGCTTCAGAGAAACGGGCAGTGAGATTGAGTCAGATG
Seq A exon
GTATGTCTGTGTTCTTCATATCACTTTAGACATGCCAAACTGAAGGAAGGAAGGAATGAATGAATCAGTTCAGCTAATTCACAGTTCTATCCGAGTGATTCATTAGCAGATCATTGATTCTTTTAAATGGGTTTCAACTCATCAACTGTTTATGCACAAATTGCAAACTTTTTGCAAACTCAAATGTATATGTGCAGTGGATATTTACATTTACAAATGGGTATGTAGAGTCTAGCTATGATTATGCACGACACTGTACATACCCATTTGTAGGTGTACATAATGGAGCTAATTATGTACATAATGTAAATACTGAAATGTTTTCAAAAAACTGTCAGTACATTGGACGTGTATCTGAACATCATAAAACAAGTGTTGTTGTGTTTGTTACAG
Seq C2 exon
TGGACAGTGCCGACCGCGAGTCTAGTCTGGATCTGATCAAGCTAGACATCTCCCGCACATTCCCATCCCTCTTCATCTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771:ENSDART00000109305:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(12.0=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]