RnoINT0147947 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79419997-79421836:+
Coord C1 exon
chr14:79419997-79420077
Coord A exon
chr14:79420078-79421741
Coord C2 exon
chr14:79421742-79421836
Length
1664 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
ACTTCTGCTTTTTTTGACAGATG
3' ss Score
10.42
Exon sequences
Seq C1 exon
AGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGAAGTGGAGAATGAAG
Seq A exon
GTACAGCTCTTCCCTCACTGAGTGGGGACTCACGGCCGTACTCCTCACTGGCTAGTGTGGCCTGTGGCAAAGGGACTGTTAAAAAACAAAAATGGGGGCTGGACAGATGGCTCAGTGGTTAAGAGCACTGACTATTCTTCCAGAAGTCCTTAGTTCAAATCCCAGCAACCACATGACTCACAGCCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCAGCAATATACTCACATACATAAAAAACAAAAATGGAAAGGAAATAACTTTTAGAAGAACTAGAACCCCACAGCTCCTGAGAGGGTTTGTGTCTCTTCACAACCAGTTGTTTCTAATTAAAGTTGCCCAGTAGCCTGATTCATTGAGTGTTAGCTTCCAGAGGTACCAGTGTGTAGCTGTGAGATTAGGAAAGGTCCACTGACACAGCAATACCTCAGTGGCTAGGCAGTGTGACTTGTCTTGTCGTTATGAATACTTAAACACAAGCTGATCCTATTTTTATTTTATAAATTGACGGGATCGTGTGTACCTATCATGTACATATTTTGAAGCATGATAAAAATGTAAGTAAATGCCTTTAAATATGTTTTTAAAAATTCAGAATTCTATTTTCAGGATTTTTTACTTTAGGGATTTCAGTATTTAAGATGAAAGTATAAGTTTAGGTAATTTATATAAGATAATATGCATTACCTCCCACAGATTGCTCCTCTTTCTATCTCAGCACATATTTTCCTCATTGTTGTTGATGATAAGTAATATCAAATTAGATGCTAGGTCATCATTTTACTACTGACCTGTGTCCCTAACTGAACCCCTTCCTTAGGGTGTTTTAATGGGGAAAGCACTTTACCTCTGTTCCTCTGGCTTATTTCAAGGATACAGTGTATAACTAACTATAGCCATCATGTTGTAGGGATTTCCTATCTGAAAGTTTGTTATCTTTTGACCAGTATCTCCCCGGTTCCTTCCTGCTCCATCCTCCCCTGCCTCTGGTAAACCTGTTCTGTTTTCTGCTACTCGGAGTTCAGCTTTTTTTAGATTGAATGTACTAATGCTGTCACACAGTCCGTATCTTTCTGGGGTTGGTTTATTCATTTGTCACAGTGCCCCTCAGCTCATCTGCTGTCCATATCTGCCACCTTTTCTTCATCTGTTTACCTGCAGACAGACAAGTAGGCTGATGAGTGTCTCGCTGCCATGCATAGTGCTGAAGCAAACATGACACGCAGTGGTCTTTGCAGAACCCTCCCGCTTCCTTCAGTTGCACACCCAGGGGTGGGATCGCTGGATTGTGCGTAGTTTTGCTTTTAAGATGTTGAGGCAATACGTAACATTTTCACCAGAGATTGTTTAGGTGGAAGGTCTCTTTGTTATGACTCCCCACTCCTGGGTTCATTGCGTGTGTTTCTCAGCTTGTCGATGATAACAAGTACTATCAATTAGATTTTGATTTTTAGACTCGATGTTCCAGCTCATGCTGTGAGGCATTTAGATCCCTGGAGTGAGAGGTTCTGTACTCGCCGTGCACACACTATGATGGTGGACACTGTAGGCAAGGCGTAATTGATTGTACTTGGGAAGGCCTCTCTCTGGGTGTCATGTTCTAAAGCGTCAGAGCCTGGTGCAATAACTTCTGCTTTTTTTGACAG
Seq C2 exon
ATGCTGGGTTTTCAGCAGCAGACAGAGAGGCCAGTCTGGAGCTTATTAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]