DreINT0160572 @ danRer10
Intron Retention
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39424449-39424810:+
Coord C1 exon
chr7:39424449-39424535
Coord A exon
chr7:39424536-39424715
Coord C2 exon
chr7:39424716-39424810
Length
180 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
AACTACTGCTCATTTTTTAGATG
3' ss Score
7.55
Exon sequences
Seq C1 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
Seq A exon
GTGATTTAATCAATTCTATTTTTCAGCTTTCTAACATTTTAAAACTTAAGCACAACTTGCATGGTTTCATTATTTTTTAAATCCAATATAGTACATTCTATTTTTTTAAGCTTGTTTATTTATTAACTTTTTTTTTTTCTGTTGAACTCATTACTCATTTAACTACTGCTCATTTTTTAG
Seq C2 exon
ATGCAGGCTTGTCTCATGCTGATCGAGAGGCCAGTCTAGAACTAATCAAGTTAGACATTTCCAGAACATTTCCCAATCTCTGTATATTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520:ENSDART00000133420:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
A:
NA
C2:
PF085986=Sds3=PD(6.3=37.5),PF0056613=RabGAP-TBC=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTATGACATCTGCCTGG
R:
TGGAATATACAGAGATTGGGAAATGT
Band lengths:
178-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]