BtaINT0145428 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118286688-118287949:+
Coord C1 exon
chr6:118286688-118286768
Coord A exon
chr6:118286769-118287854
Coord C2 exon
chr6:118287855-118287949
Length
1086 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GACTCCTGGTCTTTTGACAGATG
3' ss Score
7.84
Exon sequences
Seq C1 exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
Seq A exon
GTGTGTGTGGCAGCAGCACCAGTGGGTTCTTTCGGTCAGCTATACAAGTTGTAAATATTATGCACATCATTATTACTTAACAAGGAAAACTTCCTTAACTGAAACAGCGGTTGGTGCAAATTTATGAAAGCTTCATGGGAAAAGGGATTAAAAAAATTTTTTTTGGCTGTGTAGTACGGCACACTGGATCTTAGTTCCCTGACTAAGGAACCTGGGCTTGAACCTGGGCTTAAGCGCCTGAGTCCTAACCAGTAGACCACCAGGGAATTCCCAAAAAGGGATTTTTTTTTTTTTTAAGATCAAATGAGTTAAAGAAAAAAAAACTTTTATAAGACAGATGATACCAGTTCCTGAGAGTTGTCTGTGTCCAGACGTGCTGGAGGGCTGGGCATCATGTACGGCTTCCTGTGTTCGCTGATGGACAGTAGCCTGGCCCCCAGGAGGGCTCAAGTGCCGGTTTATAGAGGACAGCTGGAGCGCCTTCCAAAGGGACGGGAACACTGCCTGTTCCTAGGTTATGCTTTCAGAGTTTTCCACGACACACGAATGATTGTGGTTGCTTCTGTTGGTTAAGTAGTATCTTTTCTGCTGGTCGTTTTTTATACCATGTGGTATTGGAATTTTAAAAATATAAAGCAAGTTATCCATAGTTATTTGTTACAAATAACACACAGTGATGTTATACTGCAGTAACTCCCATATAGTCTACGTTTATAGCAGCAATGTTCTAGATCAAATGATTTTTCTGATGTTATCCATGTCTGGAATTCATTTGTGTTTATTCCCTTACTTTTCCTTAATTCAACTATCAATACTTGTTGATAAAAGGTAATAACAAATTAGATCATGATTTCATACCCTAGAAAATATCTGATGATGACCTAGCCTTACACAGTGCTGTGAGATTTTTGCTCTTAAAGTAAAGAACTCTGCAAACTGTTGATGCTGTAGGCTCAGGTTGTAATTAGGTCCACATGCTCCTGAAGACTGTCCCTTCCTTGTTTGATTCTCTGAAGAGTTTGAAGCCTTGCAGTCGCTCCACAGACTTGCCTCTGAGAGGTGTGATGACTCCTGGTCTTTTGACAG
Seq C2 exon
ATGCTGGTTTTTCAGCAGCAGACAGAGAAGCCAGTCTGGAGCTGATTAAACTGGACATCTCCAGAACATTCCCCAGTCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]