HsaINT0164010 @ hg19
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:7006571-7008453:+
Coord C1 exon
chr4:7006571-7006651
Coord A exon
chr4:7006652-7008358
Coord C2 exon
chr4:7008359-7008453
Length
1707 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTTTTGGCATCTTTTGACAGATG
3' ss Score
8.17
Exon sequences
Seq C1 exon
AGCTCTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCCTTAGCACAGGAGGCTCTGAAGTGGAGAACGAAG
Seq A exon
GTAGAATGTCTTCTAAAACCAGCGGACTGCTGTGGTCAATTATGTTTGTCATTCTTTATTACATAGTGAAGAAAGTTGACGTTAACTACAGTAGAGATTGTTGTGGAGTCATAAAAAGCTCCACGAGAAAAGGGTTTTTTTTGTTTTGTTTTTTTTAGCAAAAATTAAAGGTAAAAACTTTTTATAAGAAATTGGCCGGGTGTGGTGACTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGATGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGGCTGGGTGCAGGCGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGTCAACATGGCGAGACCCCCGTCTCTACTAAAAATAGAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAATCCTAGCTACTCGGGAGGCCGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGGGAGCCAAGACCGTGCCACTGCATTCCAGCCTGGGTAACAGAGTGAGACTCTGTCTCAAGAAAAAACAAAAATTAGCTAGGCGTGGTGATGTGCACCTGTAATCCCACCTACTCGGGAGGCTGAGGAAGGAGAATCGCTTAAACCCTGGAGGTGGAGGTTGCAGTGAGCCAAGATCTCACCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCCTCTAAAAAAAAAAAAAGAAATAGAACATCCCAGTTCCTGCGAGGTGTTTGTGTCCTGACATGCTGGAGGGCCCGTCATAACCAGTGCCATTCCCTTTAAAGTTGTTCATGTGACTTCCAGTACCCTGGTGTCTGGGATTAGTTGAATACTGGCTTATAGAGGAGCTCAGATTTACAGAGACAAGAACACTGCATGTTTGCTAGATTATGCCTTTAGAATTCTCCATAACACACAAGGATGATTACTTCTTTTGGTTAAGAAATACATGATTTTACTGATCATTTTTACAGTCTTTGTGGTATTAGAATTCTAAAAAGTATAAAACAAATTATTTATGATTACTTGTTAGAGATACTACACACTGGCTGGGCACAGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGTGGGCAGATAAGGCCAGGAGTTCAAAGCCAGCCTGAGCAACAAAGAAAGACCCTGTCGCTACAAAAAGATAAAAGAAAAAAGAAATATTACATGAGTATAATACCGCAATAGTTTCTACATCTAGTGAGTTTACACTGAAGATGTTTGAGATCGAGCAGTGATATATGTGTGTGTGTGTGTGTGTTTATGCTTGGAGTTTCTTTGTGTTTATTCTCCTACTTGTCCTTGCTTTCCACTGATTGTTATTGATGAGAGGCAAAATGTTAGATTTTGATTTCAGACTCTGGAAAATATCTAATGATAATCTAGAATTAGCTGGTGCCATAAGATATTTTGTTCTCTAAGAAACCCTGCAATCTGTTAAATACTCTGAAGCTGCACTCTGAGTCAAGATGTGATTAGGTCAGTGTGCTTCTGAAAAACTTTTTTCCGTGTTTTGTTCTTGTAAAACTTCAAAGGCTCGTAATTGTCCTACATTCGTGCCCTTGAGGAATGTAATTATTTTTGGCATCTTTTGACAG
Seq C2 exon
ATGCTGGTTTTTCAGCAGCAGACAGAGAAGCCAGTCTGGAGCTTATTAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-TBC1D14:NM_020773:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)