MmuINT0157281 @ mm10
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36512454-36514119:-
Coord C1 exon
chr5:36514039-36514119
Coord A exon
chr5:36512549-36514038
Coord C2 exon
chr5:36512454-36512548
Length
1490 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GACTTTTGCTTTTTTGACAGATG
3' ss Score
8.72
Exon sequences
Seq C1 exon
AGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGAAGTGGAGAATGAAG
Seq A exon
GTACAGCTCTTCCCTCAATGAGAGGCTACTCATGGCAGTACTCCTCACCGGCTAGTGTGGCCTGGGGCAAAGGGACTGTTAAAAAACAAAAATGGAAAGGAAATAGCTTTTAGAAGAAATCGAAGCCCACAGCTCCTCTTGAGAGGGTTTGCGTCTCCTGCTCACAGCCAGGTGCTTCTAATTCAAGTTGCCTGGTAGCCTGGTTCATTGAGTGTTGGCTTCCAGAGGCCTCGCAGTGATCCACTGACACAGAGCAGTACATCTGTGGCTAGGCAGTGGGACTTGTGCCATTTTGAATATTTGAACATAAGCTGTTCCTATTTTTATTTTACTTTATAAATTGACAACATCGTGTGTGTCTATCATGTACATATTTTGAAACATTTATAGCATGATAAAAATGTAAGTAAAGGCCTCTAAATATGTTTTTAAAAACTCAGGATTATATTTTCAGGACTTTATACTTTAGGGATTTCAATATTTAAGATGAAAGTATAAATGTAGGTAATCTATATTAGACAATACACATTACCTCACATAGATCGCTCTCTTGTTCTGTCTCACCACTTATTTTCCTCATTGTTGACGGTGGTGAGTAATATCAAATCAGATGCTAGGTCACCTTCTGTTCCTGATCTGTGTCCCCACCTGAACCCTTCCTTAGGGTTTGTTAATGGAAACGCGCTTTACCTCTGTTCCTGTGGCCTGTTTCAAGGATACAGTGTATAACTAGCTACAGCCATCATGTTGTGGGATTTCCTCCTATCTGAAAGTTTGTTACCTTTTAGCCAGTATCTCCCTGGTTCCTTCCTGCTTCATCCTCCCCTGCCTGTGGTAAACCTGTTCTGTTTTCTGCTACTTGGAGTTCAACTTTTTTAAACTTCGTGTACAAATGATGTCACACAGTCCTTATCTTTCGATTTGGCACAATGCCCCTCAGCCCATCTGCTGTCCATACCTGCTACCTTTGCGTATCTGTTTCCCTGCAGACAGACAGGTAGCTTGTTGAGTTTCTTGGCTACCATGCATAGTGCAGAAGTGAACACGGACACGCAGTGGTCCTTGTAGATACCACTCGTTTAGTTTAGTGTCCTTTAGTTGCATAGCCAGGAGTGGGATTGCTGGATCATGTATGTTTTGCTTTTAAGATTTTGAGGCAACATATAACATTCTCTTCAGAGGTTGTTTAGGTGAAAGGCTGTCTTTGTTATGATTCCTCACTCTTGGTTCAAATATCAAATTAGATTTTGATTTTTAGATTCTAGAAAATAATATGATGTTCCAGCTCATGCCATGAGGCATTTTGATCCCCAGAGTGAGAGATTCTGCACTTGCCATGCACACCTTATGAAGGTGGGCACTGTAGGCAAGGCGTAATTGATCTGTACTTGGGAAACGCTTCTCTCCATGTCTCATGTTATAAAGCTTCAGGGCCTGGTAATGGCCCATGTCTGTGCTGAGGCACGTAGTGACTTTTGCTTTTTTGACAG
Seq C2 exon
ATGCTGGGTTTTCAGCAGCAGACAGAGAGGCCAGTCTGGAGCTTATTAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192:ENSMUST00000146430:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types