MmuINT0157281 @ mm9
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36855103-36856768:-
Coord C1 exon
chr5:36856688-36856768
Coord A exon
chr5:36855198-36856687
Coord C2 exon
chr5:36855103-36855197
Length
1490 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GACTTTTGCTTTTTTGACAGATG
3' ss Score
8.72
Exon sequences
Seq C1 exon
AGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGAAGTGGAGAATGAAG
Seq A exon
GTACAGCTCTTCCCTCAATGAGAGGCTACTCATGGCAGTACTCCTCACCGGCTAGTGTGGCCTGGGGCAAAGGGACTGTTAAAAAACAAAAATGGAAAGGAAATAGCTTTTAGAAGAAATCGAAGCCCACAGCTCCTCTTGAGAGGGTTTGCGTCTCCTGCTCACAGCCAGGTGCTTCTAATTCAAGTTGCCTGGTAGCCTGGTTCATTGAGTGTTGGCTTCCAGAGGCCTCGCAGTGATCCACTGACACAGAGCAGTACATCTGTGGCTAGGCAGTGGGACTTGTGCCATTTTGAATATTTGAACATAAGCTGTTCCTATTTTTATTTTACTTTATAAATTGACAACATCGTGTGTGTCTATCATGTACATATTTTGAAACATTTATAGCATGATAAAAATGTAAGTAAAGGCCTCTAAATATGTTTTTAAAAACTCAGGATTATATTTTCAGGACTTTATACTTTAGGGATTTCAATATTTAAGATGAAAGTATAAATGTAGGTAATCTATATTAGACAATACACATTACCTCACATAGATCGCTCTCTTGTTCTGTCTCACCACTTATTTTCCTCATTGTTGACGGTGGTGAGTAATATCAAATCAGATGCTAGGTCACCTTCTGTTCCTGATCTGTGTCCCCACCTGAACCCTTCCTTAGGGTTTGTTAATGGAAACGCGCTTTACCTCTGTTCCTGTGGCCTGTTTCAAGGATACAGTGTATAACTAGCTACAGCCATCATGTTGTGGGATTTCCTCCTATCTGAAAGTTTGTTACCTTTTAGCCAGTATCTCCCTGGTTCCTTCCTGCTTCATCCTCCCCTGCCTGTGGTAAACCTGTTCTGTTTTCTGCTACTTGGAGTTCAACTTTTTTAAACTTCGTGTACAAATGATGTCACACAGTCCTTATCTTTCGATTTGGCACAATGCCCCTCAGCCCATCTGCTGTCCATACCTGCTACCTTTGCGTATCTGTTTCCCTGCAGACAGACAGGTAGCTTGTTGAGTTTCTTGGCTACCATGCATAGTGCAGAAGTGAACACGGACACGCAGTGGTCCTTGTAGATACCACTCGTTTAGTTTAGTGTCCTTTAGTTGCATAGCCAGGAGTGGGATTGCTGGATCATGTATGTTTTGCTTTTAAGATTTTGAGGCAACATATAACATTCTCTTCAGAGGTTGTTTAGGTGAAAGGCTGTCTTTGTTATGATTCCTCACTCTTGGTTCAAATATCAAATTAGATTTTGATTTTTAGATTCTAGAAAATAATATGATGTTCCAGCTCATGCCATGAGGCATTTTGATCCCCAGAGTGAGAGATTCTGCACTTGCCATGCACACCTTATGAAGGTGGGCACTGTAGGCAAGGCGTAATTGATCTGTACTTGGGAAACGCTTCTCTCCATGTCTCATGTTATAAAGCTTCAGGGCCTGGTAATGGCCCATGTCTGTGCTGAGGCACGTAGTGACTTTTGCTTTTTTGACAG
Seq C2 exon
ATGCTGGGTTTTCAGCAGCAGACAGAGAGGCCAGTCTGGAGCTTATTAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-Tbc1d14:NM_133910:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(38.3=100),PF0056613=RabGAP-TBC=PU(7.5=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: