DreINT0160542 @ danRer10
Intron Retention
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23221275-23223249:-
Coord C1 exon
chr17:23223169-23223249
Coord A exon
chr17:23221370-23223168
Coord C2 exon
chr17:23221275-23221369
Length
1799 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
ATCCGGTTTTAATTGATTAGATT
3' ss Score
4.14
Exon sequences
Seq C1 exon
AACTGTATGAGATCTTCCTGTCCAGAGCCAAAGAGAAGTGGAGGAGCTTCAGTGAGACCAGTTCAGTCAATGAAAATGAAG
Seq A exon
GTCTGTGTTTGTTGACACAATGATAGTAGTCAATCTTTTTTTGTCCTTCACTAATCTGACTGTAAACTAAACTAATGCATAGAAGCATGTCACTAAACAATCTTATCTTTGAAAGTGAAGCCTCACTTTCATGGATGAGTTGAAACAAAGCAGATGACTTTTCTTATCTACATTGACTCGGTAAAGGACAATGAAATGCATTTTTATGCTACACTCATGTTAATTTTACATTTTTTTTTCAATTTCAAAGGGTAGTTCACCCAAAAATTAAAACACTAAAGAGGATTTATTGAAGAATGTTGAAAAAAAGCAGCCATTGATTTCTATAGTATTTTTTGTTTCTACTATGGATGTCAGTGGCTGCTTTTTCCCAACATTAATCAGAACATCCTGTTTTGTGTTCTACAGAACTAAGAAATTCATAAAAGTTTGGAACCACCAAAGGGTGAGTAAATGGTGAGGAAATTTGCATATTTGGGTGAACTGTCCCTTTAAGAGTCATGAGAATAATGTTGTATTACATAAATTATTTTAAGGGGCACCTATGATAAAATTCTTCTTTGACAGCCGCGTATTAACATGTCTCCGTAGTTACATGTATAATCATATCAGCAAAGCAACTGGGATTAAAAGATCTGTTGAGCTCTCTGTGATCATCAATCATCATCAAATGTGATCAAGAATGAGTTTTACAAGTTGTTACAAAAAGTTTTTAAATCAGTGCATGTTTGTTATGAATTACAGCAAATTTACAGTCTTTACTTCATCACCACAGCCGCATGTCAGTACAATTATAAAAGAAGACGCTTTTTGTTTGTGGATATTAAATCAGGTTTGTTTTGTACATTAACATAACAGATATCCATACAGTAGTGGATATTAACGTGTTTCCTGTCACACTTGACATGCAAAACATGCAAAGTTAACAACCTTATAAAGACATTGTGTGTGACTCATCATTGCAGAAAGGCTTGAATTAACTCCACAACAAATACATCAAATAATCATTGGGAAAGTTCTTACTGAAGTATTTCTCACAAACATTACATGAGATCTGCTTTCTTCGTGTCTGACACTGTGCTGTTTATCTAACGCAGCCGAGGTGGAGATTGAGGCACACTCTGACAGGCACATGGGGACGGCGAGCGGGGAAAACTAGCATTAAAGGCACAGGCCACAAAAACAGCTACATAAATTTCAGAGCAGTAGATTTTAATATTCTGAAAGGTATAATAAATAGTCTAATGGGTATTTTGAGCTGAAACTTTACAAACACATTCTGGAGACACAAAAGACCTAAATCTTGAAAAGGGGTAAAATAGGTGCCCTTTAAAACATATTTTACTTTGTTACTAGTCTTAGTGTATTTGAATGAAGAAAACAGTCTGGGTGCACATAAGATACTTTATTAAAATAAAGACAAACAATAGTATTTTTAAATATCACCAGACTTTTGAAAGGTGTGTATATAGTTTATAGTTCTTTCTTGCTTTTTTTACTACTGTTCTATATTATTGCATCAGTTCTCTACACATTGATTTAAATGCCACTCAACATTGCTGTTTTGAATGTTTATTACATCCTCGTTTTTCATTCATCTGACTTGAAGGGAAAAAAAACTTTCAATATTACTTTGTGCATTTATAAGATAAGCAGGTGCTTCTGTCTAAATATTTATATATTTTTAAATTCATTTCAGAACAAAATTGTAAAGATTGAATTCTGTCAAAAGAATGAAAAATAAAGCTGGCAACCATCTCCAGTCTGACTGATGACTGTATCCGGTTTTAATTGATTAG
Seq C2 exon
ATTGTGGCGTGTCACTGGCAGACCGAGAGTCTAGTCTGGATTTAATCAAGCTGGATATTTCTAGAACCTTTCCCTCGCTCTACATATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237:ENSDART00000055756:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]