BtaINT0147348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90745620-90746591:+
Coord C1 exon
chr12:90745620-90745686
Coord A exon
chr12:90745687-90746484
Coord C2 exon
chr12:90746485-90746591
Length
798 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCGTCGCCTCTTGGTTGCAGGCG
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCCGGTCTAATTGAAGCCAACGGGGAACTCAAGGTCTTCATAGACCAGAACCTCAGTCCTGGGAAAG
Seq A exon
GTAAGGGCGCCCGGCTCGGCCCGTCCCCTTGCCGTGTGTCTTGGCGTCCCTGACGTCCCGGGGGTCCGGGCTCAGCGGCCGCATCTACCTGGCTTGTAAGTCCTTGCTGTTTGTGGAGAGCCAGGGCAAGTGGAAGCGTGCGAGGACGTGAGCACAGCACTGGGCGCGCTTTCCTCCCGCCCCAGGGCAGCCCCGGGACCCCTGGCATGTGAGAGTGGCAGGGGCCCCGTGTGCACGGTGGTCTGAAGTGAGTGGTGGATGCATGCCCACCGCTGCGTCCCCGGGGCGGGAAGGTGTCTGTCCCTTGGCTGTGTGTCCGGGTGTCCGAGTGTGGGGGGCAGTGTCCTTGTGGTCGCTCCTCCTGGGCAGAAACGTGCTGCTGCTGCAGGAGGAGGAGCCTGTGAGTCTGCGCCTGTCTGCAGACACACGGGGAGGCGTCTGGGCGCACTCAGTTCTAACTGAGGTTCTCTGAAAATCAGAGCTGTGAGCGCTGGGTCCCGTGGTCCCACCAGAACATTTTGTCGGGGGGCAGGCAGCCCATGGGGTTCGGGCAGGTTGGGGGCAGCCAGGGTGCAGTGGAGCCCTGAGCCCTGCACGCGAGGGCCTGGTGTGCGGTGGTCAGGAGAGGGCGGTGTGGGCACAGCCGCCAGGTTTGGGAGTCAGGCTCAGCTGAGGTGCCCGCAGCTGCCCGTGGGTCTGACGTGGTCCAGGGCAGGAGGGCCGCCCGAGCGGCGATCAGCTGGTGCAGATGCCGCGAGCCCGGACACGGGCCGCTGCAGCGTCGCCTCTTGGTTGCAG
Seq C2 exon
GCGTGGTGTCCCTGGTTGCCGTCCACCCCTCCACAGTGAACTCTCTCGGGAAGCAGCTCCTGCCAAAGACCTTTGGACAGTCCAACGTCAACATCACTCAGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645:ENSBTAT00000026175:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development