DreINT0162307 @ danRer10
Intron Retention
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35145958-35146257:+
Coord C1 exon
chr9:35145958-35146024
Coord A exon
chr9:35146025-35146153
Coord C2 exon
chr9:35146154-35146257
Length
129 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTATTCTTCTACCCCTGCAGGTG
3' ss Score
11.48
Exon sequences
Seq C1 exon
GCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAG
Seq A exon
GTAAGAAGAGGCTTTCTGAAGAATTATATTTAAGATCTTGCAAAAATGCTATGCAAAATCACAGACACCTGCTTGACCTTACATAGCACTACGTTTAGAAGTCTTCTGTGTATTCTTCTACCCCTGCAG
Seq C2 exon
GTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293:ENSDART00000077800:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATTGAGGCCAATGGGG
R:
GTGGTGCAATGTTCACGTTGG
Band lengths:
162-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]