BtaINT0147357 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:128026728-128027239:+
Coord C1 exon
chr1:128026728-128026833
Coord A exon
chr1:128026834-128027037
Coord C2 exon
chr1:128027038-128027239
Length
204 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGTTTCCGATTGTTTGCTAGTGT
3' ss Score
6.93
Exon sequences
Seq C1 exon
ACATCTCCACAGGACCATCTTGGTTAAATCAGGGACTGCTTTTGAACTCTACCCAATCCGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTGTCCCAATCAAG
Seq A exon
GTATGTACTTTGTCAGGGTTAGAAAGGTTAGCCGCCAAGCCTGCTCCTCACTGGAGGGGCGCTGCAATCAGCTGGGTCTCCTGCGGATCCCGGCAGAGCTCGCCTGTGGCCCTCCCCTTCCTGGGCTCTCGTCCTTTATGTTTTCCAAAGCTTAAAGCCTGCACACCACATTAACGAGCCTGTGTGTTTCCGATTGTTTGCTAG
Seq C2 exon
TGTAAACCAAGGGTTGTGCCTGGATGCTGAAGTGGCCTTAGCAACGGGGCAGCTCCTTGCCCCAAACAGTCACCAGTCCAGCAGTGCGGCCTCCCACTGCTCTGAGTCCCGAGGCGAAACGCCCTGTTCATTCAACGATGAAGACGAGGAAGAGGACGAGGAGGACTCATCCTCCCCAGAATAAAGACAGGCGCAAACCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222:ENSBTAT00000008169:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.672
Domain overlap (PFAM):
C1:
PF087815=DP=PD(4.9=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCCACAGGACCATCTTGG
R:
TGCGCCTGTCTTTATTCTGGG
Band lengths:
300-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development