DreINT0162318 @ danRer10
Intron Retention
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4430650-4432094:-
Coord C1 exon
chr15:4432052-4432094
Coord A exon
chr15:4431452-4432051
Coord C2 exon
chr15:4430650-4431451
Length
600 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCATGTCCTCTTCCTCAGCAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
ATATGGCTAGAAATTCCACCAGAACACCTCTCAGCCTCACAAG
Seq A exon
GTAAGTTTGCAAAACTTGTAAATGTCCAGTGTCCACAGATACCCTCTTTCATTTGGGTTTAACAAGTGCAGTGAAGTAACAAATAACTGAAAATGTGTAGTTTTTCTTAAGAACTGTACTTTAATTAAGGGCTTATTTTGAGTGCTATTCTGTGTTTTATCTACACTTAACCTGCAGTCGCTACTTTATATATTTATTTATTCTTGTCTACAGTGATTGGCTAAGTGGAATAATCAATCCCATGATTCCAGTCAAATCAAATCATGCTTAGATTAATCATATAACAGACCGACCTCAAGACGCAGTTGCTTTAAAAAGCACCAAACATGTAGTGTGAAGACATTAAAAGTGTACAAGAAGACATAAAATCTTTACACATAACAACCAAGAGACTGTTCAGACCGATGATGAAGCATGTCTACTGAATGATGACTGAAATCACCAATTGGCCTTGAACAGTAACTAAATGCACTACAGAATGTTACGTTATCAAACACATGTGCTTTGTGCATTTGTTTGAAAACGTAACATTCTGTAGTGCATTTAGTTGCTGGTTAAGGCCAACGTATTCTCAAAGACCTCTCATGTCCTCTTCCTCAG
Seq C2 exon
CAGCACTGCCCTGTCACATACCTCCGAGTCCCGCGTGCTGACGCCCAGCTCCTTCAACGAGGACGATGATGAGGACGATGATGACGACGACAGCCCCTCATCTCCAGAGTGATGCTTTCCCGAAACGTGCCGGGGAGGACTACTACACAGGAAAATAAGCTGACACTCCTCTCTGCGGGACATATTTTAACTAGCGTCTCTTCCCTCCTCCTGACTGGCTGCGGGTTGGAGACGGGCACATGTGTTTCTGTGGTGCTTTCAGGCCAGCGAGCCGCAGTTTTGAGTGATTCGTTTAAAAGAAGAGCCTCACGTCATCTCAGTACTTCATATCCAGAGGACGTTCCTAAATTGTATTTATTTGGGTCATATTCCAGTATGACGGTATCTGTAGTCCGGTGGGCTAGTGCCACTTTATTTGACTTGTCTCCGTGGAGGGCAACTTGTTCACCGATTGGACGGAATTACATAGACAAAAAAAGGTTGTTTTATAGGTTGATTCAGTGTCATTTTGTTGTGTTGTATAGTTTACTCTTGACATTCATCACAGTAGTTGAAGGAGGATAAAAGGAGGTCGTCCGTCTGCTGTTCTGGGAGGCGAGTGGCCTCCAGAATGTTGCATGCTGGGAGATGTAGTCTTGTTGCGAGGGATTTTTGTTGGCATTCAGAAGGAAAACGCTCCAGATCCACTCAGGTTGGCATTTTACACCAACTCGGCCATATAGAACTAATATGAATTTTGAATTTTGGTTTGCAATGTAACTGTATGTATATGTATACATATATAAACATATAATTTTGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835:ENSDART00000155619:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.892
Domain overlap (PFAM):
C1:
PF087815=DP=PD(5.5=53.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACACCTCTCAGCCTCACA
R:
ACTGAGATGACGTGAGGCTCT
Band lengths:
344-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]