HsaINT0166142 @ hg19
Intron Retention
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751]
Coordinates
chr3:141663270-141671858:-
Coord C1 exon
chr3:141671753-141671858
Coord A exon
chr3:141671539-141671752
Coord C2 exon
chr3:141663270-141671538
Length
214 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TGTTTTTAATTGTTTGCTAGTGT
3' ss Score
6.2
Exon sequences
Seq C1 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAG
Seq A exon
GTACGTATTTTTTTCAGGGTTAGAAAGGCAAACCCCAGAGCCCTGACTGTCTGTGTAGGGGTGAGCCGGGGTCATGTTACTGCCAGCACAGGTCCTGCTGAGCAGGTTTGTGGCAGATCTCACCAATGGCACCTCCTTCCTGTTTTTATTCCTATGTTTTACAAAACTGTTTATACCACATTAATGAGCCTGTGTGTTTTTAATTGTTTGCTAG
Seq C2 exon
TGTAAACCAAGGGTTATGCTTGGATGCAGAAGTGGCCTTAGCAACTGGGCAGTTCCTGGCCCCAAACAGTCACCAGTCCAGCAGTGCGGCCTCTCACTGCTCCGAGTCCCGAGGCGAGACCCCCTGTTCGTTCAATGATGAAGATGAGGAAGATGATGAGGAGGATTCCTCCTCCCCAGAATAAAGACAAGAGAAAGCCTACGTTTCAATATGTGATGCTCATGTGTGTTTGTAGTGTGAGCTCTTGTTTTTGAAATGATTGCTTCAGTCTTTGCCTTTGTTTGCACTGTGTGTTCAGTGAAAACTAGAGAAACACAATAAGCAAATCACATGAAGGCTGAGATGATTGAGATGAAAGTTAACATAGTGTGAATGAAAGTCTGGCCAACAGAGCAGTAGATGATATAACAAAGAAAGCATGCTTTCTGAGGAGATAGTGGGGATAATCCCTGAAGAGTTGGCAGTGTGAGTGCAACTCATTTATCTTCTGTGAGGTGGGATTTTTGTGTTCCTCACACCCATGTAATTATTCTTAGAATTGAGATTGCTACACGGAGCAGTCCTTGACGATCGTGTTTCTGACGTTTCTCTTCCTTGCCTGGACTGCCTTTGACAAGGCAGAAATGAACATGAAAAGTCCCCAGGAGAGGGGAGCTGTGTAGTGAGGGATACTGAGGGCAGTCCTGTGGCTGAGGGGCACAGATTGAACTGCTGAACTAGTTGGAGGTCTAGATGAGGTGCTTTACGCATCAGCTGCCTTAGACAGCTTCTAGAAAGGAGCGAGCGCTACTTCTTAAGTACTTAAGTGACATTTAGATAATTTATAGTAAAACTGAAATTATTATTAGCCAATGCATTGGTGCATAGAATTTACTAGGGCTACTTCTGGAAGCCAAAATAGAATAGCATTTCCATGTGCATTAAATACTTTGCCAGCACTGCCTTTGCCAGCATCCTAAATCTGGAGTTTTACAAAGAAGGAAACTGTATCTTTAGGTTAATCAAAGCTATGCATTTCATATAGCTTTTTCATTTAAAACAAGACAAAGAAACAAATTCCTATGACCAAATTGCTTGCCTACAGTTCCCTGCAGTAATTGTATGATCTCACCCAGTGTGCAATTTGTGAAAATGAACCAAATGTCATTACTTTTGTCTTAAAGAAAAGTCTATTTCAAGAATATGAACAGCAGTGTTTCCTTGTACATGTCACCTTTTTTCACATTTTCATTAATCAGAATGACCTTATTGAGCCTACTCCTGGGGTCAATTGCATTTCAAACTAATCCAATATTTAGTGTTTCACAGAAACACTAGAAAACGTTGAACACTCCTACTGCCTGGATATATGGTAGTGCAGTTATGTTGTTTATGGCTCAAGATGTCATTAGAAATACTGCAGTGGTGTATTCACAGCTGCTCCTTCTCTGAATGAAAGAGTGTAGGGACACCTGCCACCATGGCCAGACCCTGACTGAATTTCACATTAAGGCTTTGGAAAGGAGCAAATAATAATGGGAGAATTAACTCCAAAACTTTGACCTGAATCATGTGGATTTGTCCCAAGATTATGCTAGATGCACCAAGCATGGCCCAAATTGGTTCTTTTTTAAATCCCATGGGGGAAGTGCAGGCTCCTTCCTGTGGTGCCTCTTTATAGCCTCACCACCATGCTAACACTGAGCATGGTGAGGAGGAGGAAGCTTTGGCTAGCTAAACATGTTTAATAAGGCCATAAAAACTGAGAAAGAAAAACATTCAACTTTAGCTGAAGCTCCTTTGATACAAAAGTTTCATTCTGTCAGAAATAAGCCATAGTACAGACTCAGAGATAGAGGCAGTTTCTAGAGAACTCGGTCTTATCGTGGGTTCTGGAGCACACCTCTCAGACCAGTCAGGAACACTGGGGAGGTGACAGCAGGTCCCCAGGGGCCTGCAGGGAATCTTTCAGCTGCACGGATTGGGATTTCCCTCCAAACCAAACTGTCCTTTAAGGGGCAGCCTCCTCTTTTACTAACTCCACCCTTTCTCATCTCTGGGACCCAGCAGGGACCTGGAGAGGCCAACAGCCACTGCTACCTTTGTAGTCTTCAAAATATTGAACTGCAGGTCCCAAGATGCATTTCAGGATTTAAGACAGGTGCACTAATGATAACCATTCCTTCACCAAGTAGCAACATTCTTGCCAGAGTTCTTGGGAAACCTGTTTTTTTCTCTACTCTCCATCTCTGCTGCTCTCATGCTTTAAATTGATAAAATATGGGCTCAAAAAAAGAAAGCCGCCAAAGACTCTTATCCTTATTGGTGCCCCATCATTGGCCACCCCAGCCATAGGTGTGTGCTGTTGGTGGGAAATGGTCTCCTTCCTCAGCGTTGTGTTTGGGTTACTGGTGAGGCCAGCTCACAGAGTGACATCATGGTCACCAGTACATGTCGCTGGAGTAAAATCTTGCCTTTAGAAACTAGGTTGAGCTGTTCAGAAAGGTCAATTCTCTTCTGTATTCCCCCTCAACATTTATCTGGGTCTAAAGCTCAGCACTGAGTCACAATTTCACACAAGATCAAAGTGAGGCAGTGTTAGGAAACCATGGGCTGGGTGCAGTGCCTCTCGCCTGTAATCGTAGCACTTTGGGAGGCCGAGGCGGGCACATTGCTTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACATGACAAAACCCTGTCTCTACAAAAATACAAAAATTAGCTGGGTGTGGTGGGGCATGCCTGTAGTCCTGGCTACTCAAGAGGCTGAGGTGGGAGGATTGCTTGAGCGCAGGAGGCGGAGGTTGTAGAGCCAAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAATGGAAGTTGTGGTCACAATGCCCAGGCTTCTTTGTTATAGTGGCACGCTGGGTTACTTGCCACACACAGATCACTCCTCCCAGGGCTGCTGGCACACACTGATTGTGGGGAGTTCAAGAGGCCTTTTCCCCTTGAGGGTGTGGCTGTCCCCCTTTCAGGCGTGTGGCGTCATTCATGGAGGAAGTGCTGGCTCTACTTAGCACACGCACAGTGGCACTAGGACCTGCGTGCCTGGCCCTCAGTGGGTAGGGCGGTGCTGCCTAGGCACACAGCAGCGCTTACGGGCCCCAGGTGCCTACTAGGCTGCCTTCCTCTTCCCCGCTGTCAGTCTGTGTCCTCCACGTGCTTATTTCCTGTGGTGAGAGCAGTTGTGGTGTTTGTATACCTTGTGCCTTATGATCAAGGTGGGCCTTGGAGGAGGGCGGGAAAGGAGCGACCAACATGGCGGTCCTCCACCCCTCAGCGACACCCACCGCCCGAGAAACTACAGACAATGGCCACAAGTTTGGCGTCCTTCAATTTAATTCTTTAAAGAAGTGCTGGGAAGAAAAAGCTATGTGGTTTCTACCATTTTAGCAGGATAAAGAGGATAACTCCTTCCATTAGCAAATTTTACAGTTGTTAACAGTACTCTGCCATATTTGAAAAATAATGCCAGAGTCAGTCCTTGAAAACAAGGTAGCTCCTATCAGAATTCAAATGGAAATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCTGGGACCATGCCTGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTATGATCCACCCCTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTCAAATGGAAATATTTCACAGAGGAGTGGTTCAGTTTAGCCCTGCAAGACATCTATAACTTGACTGTTTGCTAAACCACAACTCTTTTTGGCTACTTGGGTCATAGAGACAGCAGAGTTGCTCCAAGTATAAATGTGACTTAGGCTCCCTCCAGCACACAGTGTGTATGTTGGAGGGAGTGTGGATTAGCAGAGAATGAGAACTACCTCAGCTATTCCTGCCATAACCACACTGAGAGAGGGGGGCACGGTGGGGAGCCTATTTAGCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCAGGCTGGAGTGTAGTGGCGCAATCCCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCGCATGCCGCCACACCCGACTAATTTTTTGTATTTTTAGTAGAGTCAGGGTTTCACCGTGTTGCCCAGGCTGGTGTCGAACTCCTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCGAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCGGCTCTATTTAGCTTTTTAAAAATTATTTCCTTTCAAGGGCCCTTTAATATCTATCAAGCTCCCTCCCCTAACAAAATGGGCTGTCCCTGCCCAACAAGTCTGAAATAGACCTTAAAACTGTGCTGCCTTAGTGGTAAGTAAGGGGTGGGGGTTGGACAGTGAATCTTAAGATTTCATCCTTCATTCAGTAAGCATTTGAGTACCTACTGTGAGCAGGCATTGGGGCGGAGCAGCGAGAGCCCTGCCGATGTTGGGTTCTCCTCCTATTGGGGAAACTTGATCACAGATGGAACACGTGCAGATTGATTGATGAGTGCTGTGGAGAAAGCAGCAGCGTAGCGGGACCGTTTGGGAAAGGCTACTTTGGCTGGGGGTGGCTGGGAAAGGCCCCTCTGGGAAAGAGACAGTTTTACTGAGTCAGATGGTGGAAAGACAGATGTCTCTATACTTTCTTAACAAGCCACTCTGTCCCATAACATGCACTTGGAATCTCTCCTAAGTTCCAGAGGCCCCACTGTTCCAGTTTCAAGCCTTCATTTTGGAGTCTGTTTGGGAACTTTTAAGACTTCAAAGCAAAGTTAGCTACCAGCAATTTCTGTAAACCAAGAGAAGATTGTCACAAAGATTCACTACTTTCCAACTGAATCTATGCAGTAGAAAAATCATTAGAAAATACAAAAATTAGCCGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCCAGGTGACAGAGCAGGACTCTGTCTCAAAAAAAGAAAAAAGAAAGAAAGAAAAATGATTAGAAATTGAGAACTATTTTACGTGTTTCTAAGTTGTTGGCTACATCAAAGAGATCATCTGTATTCTGCATATGGGCTGGCTTTGGTGAAGCTGATGACTGGACTTCTAAGAACCGTTTTCCCAAATGGGTTCCCATATTCATGCACCCAAAGCAATGGTCCCCAAGCACTGATGAAAACTAATATGCATTTCCCAAAGACCCACACTATGTATCAGGAGCCTGCACCATGCCATTTGAATGACCCTCAGCAATGTGCCTCCCTGCCCTCAAATTCCCAGTTGATAACAGTGTTTGATTAAATTTCCACTCAAGCCAAACATGGTTACTAAGAAGAGAAAAACCTGATGTTTGCATAATATTTTTTTTCCCCTCGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCAAGTAGTTGGGATTACAGACATGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCACACTGGTCTTGAACTTCTAACCATGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCACGCCCAGCCTAAGATTTTATGATTAAAAAAAATTCAAGCTCAATACCCACATAAATTATAACGTTTCTCAGGAAGTAGTCCCTTAACCAAAACGTCTCTGAGAAGTGATGCTTAGGTAATCTCTGGGATCCGATTTTCCCACATGTCTCACTCCACAGTATGCTAAAGAAGAAAAAGTGAGTGGGCACAACACTTTGACCCTCTGGCTAAGCCCTGGGAGTCCCTGACAGGTCCAGAAACTTCTCTGACACCCATTCACCAGGGTGCTGAGATAGGAGAAAGTGCTCATTTATAATGTGTATTCTGTGCAGCTGTTCTCAGACAAGACCGGATCTTGTCATCTTACCTTTTGCTTTACAAAAAAGGCCTGTTGAAGTCAATGCTGTCTTGCCCCTTGCTGTTTCAGCAGGTTAGACTTTGGTCTTCACTGCTTATAGCTGCATTGGAGGCCAACGTAGCTGATGCTCAGGGTCAGGCCTCGCCCCTTCGCCGCAGGTCTCAGGATCGGGGATAACATCGCTCCCACCCTGCTCATTTAGAGATGGGAAACAAGCAAGAGCTTGACTTGCCTCCCATCCCTCAGCCTGTCTGTGGCAGAGCCTGCACCAAAACCCAGAGCTTCTTCCCTCCGTGAGGGCCACGCTGTCACCACAGTCCTCCCAGATGGGTTTTGGATTAGCATCAGTCCTGTGTCACCAAGTGCCAAACAGCTGAGGGGTAGAAGTGGGACTCCTTTCCCGAGCCCCAGCATGAGGCTGTGGTGTCAGGTTTAGGCCTCTCTCAAGTCAGAAAACCCCGGGCTGAGACCTCCACAGACAAGGGCTCCCCATGCTGGCCATTGGCAGGGGCCCAAGAAGTTCAGTGACCAACTGGTCCTTCCACACCACACCAGCTGGTGCTGCCCATGTCTGTCGAATCATAACGGAAAATTCCCCAGATCACGTTTGGATTTAAAAACTCATCCCTTGTCGTGCTTCAATGCATGCCATTTGTCACTTACCATACTTCACCATGGCCGAGCTTCATGTCACATGGCCTGGCGATTGTGCTTGTTCACACTGGGGCCAGGATTTTCATACTAAAACGTCACTGACAATGGGGCTACTTTTCTCCTGAATAGCTCCTCTGGGCTTGTTGCAGTTCTAGTTTTCCCAGTAGTTCCATGGCAGGTTCAACCTCTCAGTGTCCTGAAAAATGGAACCACCCACTAACCATATGCACTGGCTGCCCAGGTGGCTGCACTCCGGGGATCACGTTTCAGTACTGAGTTCCTTCACGCACTTGGTTCACCACCATCACTCTTGAGTTTTGGACAAAAGAGGTGGGTATGCCAGGCACAGTGGCTCACGCCTGTGATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAAACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATATAAAATTAGCCGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGGAGGCAAAAGTTGCAATGAGCTGAGATCGTGCCATTTGCACTCCAGCCTGGGCAACAAGAGCGAAATTCCATCTCAAAAAAAAAAGGTGGGTAAAGGGCCATGAGCCCAAACCACTAGGTTGTTCACCTTTTCATCTGAAAATGCTTTACTCTGACTATGTGCTATTGGGTTTTATTTCCAGAAAATATAGTTCTCCTTTTTTCTGCATGAAGGATACATCGTGGTGCCACATGCTTTAAGCAATTTAAACAAGAGAGATAAGAGGAAAATGCAACCACCACATCTGACTTGCCCAATGTAGACTTTCCTTTATTAGATTGAAGTACACAACCTAATATGATATATTATTTTGTAGTATCTCAGACTTTGTAAATAAATGCCATTATTTTTATATGGAAATTTTATAGAAGAGCTATTTCTGTATACGTAATTACTCCTGATTTTCTGAAATTGCTTCTGGTAGATAACAGACAAGTCCTAAGCAGTGTTCCACTAAGGGTGGTTCCAGGCCTGCCTGCCGTGGAGTTGACTGGGGGAATTTTACAGTTTTGCGATCCTAGGATGCGTCCCAGACGCTCAGTCAGAAGTGCTGGAGGTGGGGCCTGGGAAGCTGTATTTGTAATGAACTCTGGTGTTTTTTGTCCATTAAAGTGTATCTTTGTCCATCCTATAAGATTAAAGGAAAGAAAAAGCATCTCAAATGAGTGTAAGTTGTTCTTGAGAAAAAAATGTATCAGACTTTTATGATTTGAATGAAATGTATTATAGAAAAAAATAAACACTTTAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-TFDP2:NM_006286:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.607
Domain overlap (PFAM):
C1:
PF087815=DP=PD(4.9=19.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACCTTACCCCAGTCAAG
R:
GTGCAAACAAAGGCAAAGACTGA
Band lengths:
308-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)