GgaINT0034486 @ galGal4
Intron Retention
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9818914-9826731:-
Coord C1 exon
chr9:9826632-9826731
Coord A exon
chr9:9825516-9826631
Coord C2 exon
chr9:9818914-9825515
Length
1116 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CATTTCTGTTGTTTTAATAGTGA
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATATGTCTACAGGATTGTCATGGATGAACCAAGGATTACTTTCAGCACAAGCAGTTTCACATTCAGAGATAGCAGGAGGCACTTCTGATTCAAAATCAAG
Seq A exon
GTAAATAAAATAATTTTTTATTCAAGGCTGCTAATAGATTCTTGTATACTTTCAGTGACCTCACTGGTTCATACCATTTACATGCAGGACATGGGATGTTTTCTGTTAAGCTTGATTTTCAGTTGTGAAAGTCCTTTTTGCTAATTGTATTTGAAAGGTTAAATCTACATTTTAAACATGCTAGTTATTTTATATCTACTGTTGCAGAAGAGTAGAATCACTTCCAAGCCCTTGTAAAAACATCTGAGCCATAAAATCACAAGGCTGAAAAAGACCTCCAAGTTCATCTAAGTCCAACCATCGGGTCCGCCAGTATTTTCCCCACTAAACCATGTCCCTTACTACAGCATCTAAACATGTCTTAAATATCTCCAGGAACAGTGACTCAACCACTGCCCCGGACAGCCCGTTCCAAATATCCAACCTGAACCTTCCTTGGTGTAATTTGAGGCCATTTTCTCTGGTCCTGTCAGTAGATACACAGAAGAGGCCAACCCCCACCACGTCACAAGCTCCTTTTCAGGCAGTTGTAGAGAGCTCTCCCTTGAGCCTTCTCTTCCTCAGACTGAACAATCCCAGCTCCCTCAGCCACTCCTCACAAGACTTGTGCTTTAATACCCTTTCACAGCTTCATTCTCCTCTGGACACACTCTGGAGCCTCAATGTCTTTCTTGTTTTGAGGGGCCCAAAACTGAACACAGCACTCGAGGTGCAGCCTCAGCAGAGCTGAGTAAAGGGTGACAATCACCTCCCTGCTCCTGTTGGCTGCACTATTTCTGATACAAGCCAGGATGCCACTGGCGGTCTTGGCCACCTGGGCACACTGCTGGCTCACATTCAGCCAAGCATCAACCAACATCCCCAAGTTCTTTTTTCAGCTTAAGCAATTCTACTAGGCAATTAGGGAGAGGGGGTGGGGAAAAGGCCAATCTTTTTTAGGCTATTTTCCAATATTTCAGCCATTTTCAAAACCATGAGCTGTGCTTAACATAAAGTTTTAGGATGTTTCTTTTCTGACATCATTTCTTGCCCTAAAGAAAAAACAGAGGCCAAAAAGAAAGCTTAATGCTTTATGAGAAATCTTCTAAACTTTTAACATTTCTGTTGTTTTAATAG
Seq C2 exon
TGAGAATCCAGGGTTGTGTTTGGATACTGAAGTGGCTTTAGCAACTGGGCAGTTTCTTGCCCCTAGCAGTCAGCAGTCCAGTAGTGCAACATCACGCTACTCTGAATCACGGGGAGAAACTCCATGCTCATTCAATGAAGAAGAAGAAGAGGATGAAGATGAAGACGACCCTTCCTCCCCAGAGTAAAGACAGTGAAAAAAATGGATACACAAAATGCTGCTCATATATATTCTTAATGGGAGCTCACACTTGGATTTTACTTAGGTTTCTTGCCTTGGTTTGCACTGTGCTCAGTGAAGCAAAATGGAAGCTTCAAAATAAATTAACCCAAAGCTGAAATGGGAAACTTTTTATAACTGAACAGAGTGACATGCAGACACAGAGCAAAGCAGTATTTTTTATCAGCTACAACCAAGGAAAAGAACAAAGTCCCTGGAGATACAGCAAAGTAAACATCAAAGTTTGTATTTTCCATTTTGGGATATTCTGTCTCAAGTCTCTGTCTTCATCATATCTTTACCAGATGGGGAAGAAAAAGCCAATTCTTGTGTTGTCTTTTGGATGTTCTACCTTTAAAAAATAAAAAATAAAAACCGGGGGGGAGGGAAGGGGGGAGGAAGAGGGAGCACATGGATGTGCTAAAATAGCTATTTAAAACTATCCTGTATGAAAACTGTTGTAGGGAAAAGGAGCTGTTAGAATATTTGCTTTTTTTCTGTTCAACTTGCTGTATTGAAGATTCTTAAAGTAATATAAATTGCAGGTTATTAAATCAATCTTGGATTAGCTTAAATCCATTTTAGATACTCTAAAAGTAGCTTTTCTCTTTTGAAAGGTTCATATGTTTGTTTATACTGCAAACCTAACTTATTACAAGTGATTATTAGCCATTATTAAGCAGTCGGCATAGAAACAGTATTCTCTGCACCAGCTTTTTTCAAGGAAAGAAAAGTGGAAACAATGATTTACGGATTACAGCACATACTATAGAACTTCTCTTTTACTGTTCAGGCATTATAGTCCATTTGACTTTATAGCATGAATATTAAAAAAGCAAAAAAAAAACACAAACAAAGAGGCCTCTACGTATCAAAGATCTCAGGCAGTATGATTTCAAGTCAGGTAATGGAAAGTTCAGATTTTTAGGAAAGAATAAATTTTGACAATATGCAATTTTATGTTTTGCATTCTAGTCATCATGGGTTGATAGATAATTTACTTCTGCTGCACACACCTCAACGCGCCTTTGAAAAACATTAGTATTGAACAAGTTAAAATGATTTGGCTGAAGTTATACAACATGAATTCCCTTTGAACTGTTCAATTATACTTAAAACAAGTGGCTCCATACTCTGTATTTAACATCACACTCACTCACAAAGACCTTTTTAAAAATCCCTGCATAACAGCACAACGCTGTAGATGTACGGTTCTCATAGTGTTCCGACATCCAATATTTTAAGTAGCCCCAAAGTTAACTAGTTTCAGCTCAGTAAATAAAAAGTGTTTCTTTTTAGTTTCGTACTGTATGTCAGTAATTGACCTTTTTCTAAGTACCAGTATAGTACCTGTCAGATCTCAGTGGCACTGTCTCTGTTATGTAAAGATTAGGCAGCTTAGAATACTGTATTTGCTTGAGCAGTGGCAGCACATTGCAGCCACTGACTGCTGCAGCTGTTACTCAGGCACAGCATGGGCTGTGTCCACCTCAGCATTTACAAAGCCACACGCAAGCCAAGGTGACCCAAAAGCACTCAGCCTAAGATAGGAAGGTGAACCAGCACTTCAGCTAAAAAAAGATGGCTGTTGTACAGATGTTATGACTAGCTACACACAGGACAGGTAAAACTGCAAGAAGCATACAGATACACCTACATGTTCTCATTAAAAATCATCCACGTCAAAACTTTTTGTATTCAACATTAGGACAGCACCATTTTTAAGACATACAGCTCTTCTCCGGGAAGGCAAAGCAATCTAGCTTATACAAATGATATGCAAATACACAAAAAAGAAAAACCACATGCCTACCCTGTTATTCACCCTCCAGGCAAGACTGTTAGACTGCCCTATGCACATGGCTCACAGGCAACAGCAGGCTGAGATTTACACCACCTCACTGCAACCAAATCTGTAATGCTACCTCTCTATGAAGAAAAGCTTTACAAAGAGAAAATGATATTCTCACAGAGAGAGTCAGTGTACTTGACTAAATGGTGAGATAAGACGACAAGGTGACTGATGCTCTGGACATACCATTAGCTACATGAATGGCATTTCATTTAAACAGGCAGTTGCCTTTATTCATGAAAATATATTGTCCTCTCAGCTTTCATTGGACAGGCCAGAGGGAAGGTACCCAATGTACACAGGACATCCTGAGGCACTTTAAGAGGGGGGCAGCATTTTCTCAAGTAATTATTCCTCACCCCTCAATATTTTATGGACAAATCTAGTTGTATGCTTTGTTCATGTTTCCCCACTCAAAATCTGCATAAAAAGTAACAACAGCAAAGCATTCAACAACTTCTGAAGAGCTTGAGGTACTTTGAAATATAAGATGCTGACAAATTAAAAAAAAAAAAAATCTTGCCCAGAAATAGGATGTATTTCATTGTGTATTTTATTAGTAGTCAGAGTGCTTGGCAGGAGGAAGATCTTCAGTCATACCTCGCTCCCACTGATGTCTGTTTCCATCAGCACAGCTACTTGCTCTCTAGGCTAACTCAAAGCTAGCAACTTTTTTTTTTTCCCCTACTGTTCAATTTAGGAGCACATAATATTTACGCAGTTGAACAGAGACTTTTATAAGTTATTTTTCTGAACTAGTGGAATACAAAGGACAAAACAAGTTAGAACACTTAGAAGAAACTTCAAAAGGAAATTCTTTCCTTAGGATTCTTTGTGCCAAGTTACAGCTGAGGATGGAGTTCAACTACAGCACTGTGTTCCTGTGGTTACACTATGAGAGCCCTGGGCCTTATCCAACCATCGTCACTCATGTACAATCTCAGGCACGCCTTTCAGTCTTTCTAGTTGAGCTTAATTGACATTAATAAATACAATAAAGTAGGGAAATGCAGGACAAGACCTCACTAAATACAGATGAAGTTGCATCTGCCTTAAGCTCAGAGTAATTAATGAACAGCAAAGGGATTAAGAATATTAACCAACCCCACTGCTCCCACTAAGCTAGCAGCAGTAGTGCTCAGCTGCTTCAACACAGCAGCCTTCCCTGTGTCAGCCAGCAGCTGGGATTTTCAACAATAAAATGCTCAGAAGCAAAACAGGCTCTCATTTTCTAGTCAAGTAGCACCATATTCTGCTTGCTTGTGCTGAGTATTCACAGATACGAAACAGGGTGCAGCCCGCACCAGCAGGTGACTCATACAAGGCAGAGTTAGTATTTGATTTTTCATACAAATTCTATTTGACATTTTTCCATCCCTTGGAATGCTGTTTCCAAATGCTTATACATTCAGCAGTGTAATGCTATGTATAAACGCTATTTCACATATTGCAGTAAAAAAAAATAATCTAAATTTGACTTAAAGACAACACGGCAGCATCACAAACTAGGTGAAAAGTGATGAGCAGCAGACAGCATACTTTTAGCATTTGAAACTGATAAAATATATGTGGATTTTAGTTCTAGAAGTTCCATTACTGCATGTGAATGTTCTTACTTTGCTGGCAACAATCCACCTAATCTAAGACAGTGCATGTATGTGAGTTAAGGTTAAAGCACACGCTATCTGTTCAGCTGCAGTAACTGTTCCATTGAATGTACACTGCCGCACACCGCAGCTCAGATATTTCCATCCTGGCTGTAGCCCCATTCCCAGCTGGAAGTTGCTGAGTGTACAAAATACCAACAGAAGGACTCGTGCTGAACAACCAAGTCAGCCTGATGCAGCATGACATACATGGGCCAAAGAACCCAGCATATTTTAGAAACAAACAAGTTTATACATAAGATGATGTGTGAATTTAGAACTCGACAGTTAAGGTTATAAATGCCAAGTGCTCTTTCTACTGACTACACCCAGTACTTTAAATGAAGAGCGTGGCTGAAAGTGAATCGCATTTGTAACTAAACACTGGGCAGTACTCGTTTTTCTAATTAGCTGCCTCTTTTCAGCTGTAAATTATCCAGGCACTTCATAGAGAAGACTTCACTTCTAATGAGTTAAAGACACACAGGCTTGGGACTCATTTAAAAACAAAGCTCGAGTGTTTAGTAAATAAACCAGTTCTCTTCTGACTGACCTACCTAATTTGCATTTTCATTAACCTAGTTTTCATTGCAAGAATACCTCTGTTTCAGGAGCGTATTTTAAATAACCAAATATAATGAGGCTGGGAAGAGATGATGACTTTTTTTATGTTTTAAGAATTCTCATCATAGCCATACTTCGGGGCAACATCTTTCTGCTTCCTGCACGCTTACTTCGTCTTAAAGGAAGAACTTTTCTGCTGGCTGTTCTTCACATAAATCCCAGTACCCTGGAACTCCTTGGAACTCTCATTGCTTAGACTTCACTGAGTTCATAGATTCCCTCTCCTGCTTTTCTGTCCATTTACTTCAGCGAGTGTTTTTAAGAGGCCACGCAGGGCTGATGCCAGGACCCAGGCACCTGCCACTGCCAACCTTGTTCCCAGTGGTTCCTCCCAGCTCCGTGCAGCTGCTCACACAGGCAGTGCACTCTCCACAGGCCCCTTGCCAGGCGGCACTGACTGTTACCCCCTGCTCCTTAGGTCAGCCAGCCAGAACAAATGGGTTTTTCCCACTTAGATCTCTTTGACAGTATCCAATAATTTAGGATATCTGCTTAAGTCACAAATCAAAAATCCATGTTCACATTTGGGCAGAAGCATCTTTACTAGAATGTGGTACCCCACTTAATTTTCAGACTTCAGACATAAGAGACCACAGGCCAACAAGAAGCAGTTACATACAATTTCAATTCAGCTGTAGATTTAAATTAAACTATGCAGTATTCAGGGAACTTTTCTGAGACAAAACGAGCCTTTCCCTGTGACTTGTTTTGTTAGAACCCACACTGCTACCCAGGCTGAGTGAAACGCACTGATTCCACGGCAGTGTCTGGATGAAGGTTTACAGATCACATGCAGCTATTCAGAATGGCCACAAGATAAAAATATTTACCAAAAAAGAAAGTCCACAAAGTGTCTCCATTTTTTTTAGTGGATTTGTTAATGCTGTAAGGTAACTGACAATTAATAATTTGGTTGCAGTATTATGCAGATTAATCAGACCTCCCAGAACCTCCCTGGTAAAATACCAGCTGAACCAAAAAGCCATCACACTTCAGATACTCCCCCCTGTCTCTAAAGCCAGGTTGTATATACAAAAAATACTTCAGATTAGAGAGGTTTTAATAAAGACGTGCAAAAACGATGACCCTGTACCTCACAAGACCTATGGTGACTGGAGCCAGGAATACTACTCAGAACCAAGCCGGGCACACCGGTGCTGGCTGAGGCAGCCCCACACGCTGCTGGCACCGCGCAGCAGAGCTGGCAAGGAAGCTCCCTGTAAAGGCTCACCAGTGTCAGCCATGAACCAGGCAGGTCCCCAGCAGCTCCCTCCATGTTGCGCTGCTGGAATGGTACTTGCTAACACCTGTTACGTTCTGCGTGGAAGTGCCTTGTACCAACACTTCCTTTTTCCACTGAAAACGCAGAAACCACTTGCATGAAACCATTTTAAGTGAAATACATGAAGACTTTTAAGAAAGAAGCCAGTCGTGGACAAAAACATTACTTTTTAATGCTGCACTTAAAGTTTGTAAACTTGGCAGGGGTTAGGGGGAGAAGCACTGACGTGCAGTTCACAAAGATGGAAACTGCAGCCAACTCTTAGTTTCAGTTAATTGCTCTTCATTCTGGCACTCTCTACCATCTCCCTCCTCCCAGCCATGGGCACAAAGCATCACATTTTGGCAGAAATGTTCCTCCCTGTTCTTGTGCTCATTCCTGTGTCTTTGGGAAGGCCCAAGCTGCTGCTTAGTTTTTGAGATAATTTTCTGTGGATTTTTGAATTCTCCAAATACCTTTAAATTCTACAGTAAAGTTTTATTTTTGTAGGACTGCTATTAAGCTATCCTGATTTCTTTTTCCCAAATCAAACAGCGTTACTTTCTACTACCACATTGTACGTGGCTAGGAGTAGTGTAAAAGGAATGCAGTAGCATTATGTGTGCTTTAAACACTGAGAAAGATATAAAGAAAAATGCATATACAAAGTTTTACTTTCCTAATAGGAACACTGTCATTAGCAAATAGCATATTTGAACCAATAGGAAATATTACTTTGTAGTAGCAAACACTTTGTAAATAAAAACTTGTTATTTTTTTAATGGAAATTTTATAGAAGCTATTTCTGTATACTCAGTTGATTCCATGTTTACTGAAAATGCTGCAAGCGGGAATTGTACATTGAAAATGGGGGTGGGAGCAATGGCTGACCGCAGCAGCAACAGCTGCGTGCTGGAGAGAAACAGCACCCGGCTGCTGCGAGTGGGAAGGGCAGCCTGACTGTACAGGAACTAAATAAAGGCATTTCAAGGCAACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759:ENSGALT00000045629:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.855
Domain overlap (PFAM):
C1:
PF087815=DP=PD(5.5=23.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCACAAGCAGTTTCACA
R:
ACAGTGCAAACCAAGGCAAGA
Band lengths:
349-1465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]