MmuINT0159254 @ mm10
Intron Retention
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96317477-96318878:+
Coord C1 exon
chr9:96317477-96317582
Coord A exon
chr9:96317583-96317787
Coord C2 exon
chr9:96317788-96318878
Length
205 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GTTCTTAACTTGCTTGCTAGTGT
3' ss Score
5.12
Exon sequences
Seq C1 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAATCAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAG
Seq A exon
GTATGTAGTTTTTTCAAGGTGAGAAAAGCAAGCCACAGAGAGAGACCTGACGCTGCTGTGTTGCTGCTGCAACAAGTGGCTCGGGTTGAGAGCAAGCAGACCTTGCCAGCAGCACCTCCTTAGTTCTTATTCCTATGTTGTGCAGAAAGAAAAGCGCTGTCTCCCCTGAATTAACGAGCCTGTGTGTTCTTAACTTGCTTGCTAG
Seq C2 exon
TGTAAACCAAGGGTTGTGCTTGGATGCTGAAGTGGCCTTAGCAACTGGGCAGCTCCCTGCCTCAAACAGTCACCAGTCCAGCAGTGCAGCCTCTCACTTCTCGGAGTCCCGCGGCGAGACCCCCTGTTCATTCAACGATGAAGATGAGGAAGATGAAGAGGAGGATCCCTCCTCCCCAGAATAAAGACAGGAGAGAACTCATGTTTTAATATTTGATGCTCATATGTGTCTTTAGTGTGAGCTCTTGTGTTTTGAAATGATTGCTTCAGTCTTTGCCTTTGTTTGCATTTGTGTTTAGTGAAAACTAGAGAAACACAATAAGCAAATCACTTGAAGGCTGAGATGATTGAACTGAAAGTTCCCATAGCGTGGATGAAACCGAGCAGCAGAGCAGCAGGACATGGCCAACAAAGCGTGCTTTCTGAGGACGTGGAGAGTGGCAGTGACGAAGGTCATTTGTTTTCAGGGAGGTAGGGTTTAAAGACCCCCAGTGGGAGCATTTAGATGGCAGGCGGCTGCAAGGAGTCTGCAGTGGTAACAGCTTCTCTCTAGCCTGGCTGGCTTTGGTAGGCAAAAGTGAACTTGGAAGTCACAGTGGGATCAGAGGGGTGTAGGTTGCGATCCTTGTCGCCTGAGGAGCCGGTGGACTGCTGAGCTAGTCCAGGGGTAGCCGGTCCCCTCATGCATCTGCTGCCTTAGCTTCTAGAACGGAGCAAGCTTTTACGTACCTAGGTGACATGTAGAAAAATTTACAGTAAACTGAAATGACCATTTGTCAATGCATTGGTGCATAGGAGTTACTAGGGCTACTTCTGGAAGCCAAAATAGAATAGCATCTCCATGTGCATTAAAAACTTCGCCAGCACTGCCTTTTGCCAGCATTCTAAATTTGGAGTTTTACTGAGAAGGAAACTGTTTTTATAGTTTTAATCAGAGCTATGCATTTCATACAGCTTTTTAATTTACAATGAAACAAAGAAACAAATTCCTTTGACCAAATTGCTTGTCTATAGTTGTCTGCAGTACTGTATGATTTTACCCATGTGCAATTTGTAAAATGAACCAGATGTCACTACTTTTGTCTTTATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411:ENSMUST00000165120:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF087815=DP=PD(4.9=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCACTGTACCCCAATCAA
R:
ACAAAGGCAAAGACTGAAGCA
Band lengths:
304-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types