BtaINT0147573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024269 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr3:51835404-51835870:+
Coord C1 exon
chr3:51835404-51835544
Coord A exon
chr3:51835545-51835711
Coord C2 exon
chr3:51835712-51835870
Length
167 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TGTTTTCTTCTTTTCTCCAGTTT
3' ss Score
9.42
Exon sequences
Seq C1 exon
ATTGTGATTCAGATTCCACCCTCTGGGGATAGTAGTGGTTGGCCAGATGGTTATGAAGATTTAGAGTCTGGTGATAATGGATTTCCAGGAGACATGGATGAAGGAGACACTTCCTTCTTCAGCCGACTTGAAATTGTGGTG
Seq A exon
GTATGTATTTGTTTGTAGGAGGTAGTTTGTAGAGATTGTTGTCTTTTTGGTTGGCTTTAGTCGGGGACCATTGGAAAATAAAATCAGATGTTAAAGGCTAAAGCTTCTAAAGCTACATGCTTCATTTGACTGTCATTTGTTTCCATCTGTTTTCTTCTTTTCTCCAG
Seq C2 exon
TTTAATTGTAGCCTGCGACAGGTAGGGAATCCCCGTACCTTCCAGGACGAACCCAACAGGAACGTCACCTTCAACATGGAGCTGTACAACACTGACCTCTTTCTCGTGCCCTCCCAGGGGGTCTTCTCCGTGGCAGAGAATGGACACGTTTATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024269:ENSBTAT00000033522:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(16.9=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATAGTAGTGGTTGGCCA
R:
TCTCTGCCACGGAGAAGACC
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]