RnoINT0150323 @ rn6
Intron Retention
Gene
ENSRNOG00000002093 | Tgfbr3
Description
transforming growth factor beta receptor 3 [Source:RGD Symbol;Acc:61821]
Coordinates
chr14:3651772-3652287:+
Coord C1 exon
chr14:3651772-3651912
Coord A exon
chr14:3651913-3652128
Coord C2 exon
chr14:3652129-3652287
Length
216 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ATCTGTTGGCGATTTTCTAGTTT
3' ss Score
3.81
Exon sequences
Seq C1 exon
ATTGTGGTGCAGGCTCCGTCCCCTGGGGATAGCAGTGGCTGGCCTGATGGCTATGAAGACTTGGAGTCAGGCGATAATGGATTTCCTGGAGACGGGGATGAAGGAGAAACTGCCCCCCTGAGCCGAGCTGGAGTGGTGGTG
Seq A exon
GTATGTGTTGGTTTCCTTTAGATGGTTCTATGGATACATTGTTGCTGGAGCTGGAGTGGTGGTGATACGGGTTGGGTCTCCCTTAGATGGCTCTGTGGATAACATTGTCGTTCATTTGGTTTGTTTCACTGGGAAGTTTCAAAACATGAAATTATGTGTTAAAAGCCAAAGCTCTTCATGTGACTGATGTGTCCTTATCTGTTGGCGATTTTCTAG
Seq C2 exon
TTTAACTGCAGCTTGCGGCAGCTGAGGAATCCCAGTGGCTTCCAGGGCCAGCTCGATGGAAATGCTACCTTCAACATGGAGCTGTATAACACAGACCTCTTTCTGGTGCCCTCCCCAGGGGTCTTCTCTGTGGCAGAGAACGAGCATGTTTATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002093:ENSRNOT00000002867:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(17.0=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGTGCAGGCTCCGT
R:
AAACATGCTCGTTCTCTGCCA
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]