HsaINT0166388 @ hg19
Intron Retention
Gene
ENSG00000069702 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:11774]
Coordinates
chr1:92181793-92182265:-
Coord C1 exon
chr1:92182125-92182265
Coord A exon
chr1:92181952-92182124
Coord C2 exon
chr1:92181793-92181951
Length
173 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CTGTGGGTTGTTATTTCCAGTTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
ATTGTGATACAGGTTCCAGCCCTTGGGGACAGTAGTGGTTGGCCAGATGGTTATGAAGATCTGGAGTCAGGTGATAATGGATTTCCGGGAGATATGGATGAAGGAGATGCTTCCCTGTTCACCCGACCTGAAATCGTGGTG
Seq A exon
GTATGTGTTTGTTATCAGTAGGGGGTTTGTGGAAAATGCTGTCTATTTTGTTGGCTTTAGTTAGGGACTATCTGAAAATAAAATCAGATGTTAAAAGCCAAAGCTCATGAAGCTACAGGGCCTTCATCCTTCATATGACTGTCATTAATCTTCCTGTGGGTTGTTATTTCCAG
Seq C2 exon
TTTAATTGCAGCCTTCAGCAGGTGAGGAACCCCAGCAGCTTCCAGGAACAGCCCCACGGAAACATCACCTTCAACATGGAGCTATACAACACTGACCTCTTTTTGGTGCCCTCCCAGGGCGTCTTCTCTGTGCCAGAGAATGGACACGTTTATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000069702-TGFBR3:NM_001195684:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(16.9=100),PF0038616=C1q=PU(0.1=0.0)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(19.1=100),PF0038616=C1q=FE(72.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATACAGGTTCCAGCCCT
R:
GGCACCAAAAAGAGGTCAGTGT
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)