GgaINT0037406 @ galGal3
Intron Retention
Gene
ENSGALG00000006038 | Q90998_CHICK
Description
NA
Coordinates
chr8:15135845-15136421:+
Coord C1 exon
chr8:15135845-15135976
Coord A exon
chr8:15135977-15136244
Coord C2 exon
chr8:15136245-15136421
Length
268 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
TATCTTTTTTGTAATTTCAGTTT
3' ss Score
6.97
Exon sequences
Seq C1 exon
ATTGTCATACAGCTGTCATCACCAGCTGAAGGCAGCAGCTTTGATGATGATGACATGGAATCAGGTGATAATGGATTTCCAGGGGATGCTGACGAGGGAGATGTTACTTTCTCAAACTGGCCTGAAATAGCG
Seq A exon
GTATGTTACTCTTGCTTTTGCACCTGACAACTGAGAAAAACCTGTTGTAATAGGCAGTTCACAGAAATTACATTAATAATATAGCAATTAACTTGTCTTTACCACTTTTCCTTCCACTTCAATTTCTTGTGACCCTGCTGAAGGGTTGCGCTAAGTAAAAGGAATGTGGGAGGGGCATTACTGTATACTCAAATTTGTCCTTACTGTGCTACTGCTACCACTTCTAACTCAGAATGCATTTGTACTTTTATCTTTTTTGTAATTTCAG
Seq C2 exon
TTTAATTGCACACTGCACCAGCCAGAGAAGGACTTTTTTAATCCTGCCATGTTCTGGCCTCCTGAGCCTCACATCACCAATGTGACCTTCAACATGGAGCTCTACAAAACAGATCTATTCCTTGCTCCCTCCCAAGGACTCTTCTCGGTTGCTGAAAATGGGCCAATATACGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038:ENSGALT00000033354:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.7=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTGTCATCACCAGCTGA
R:
ATTGGCCCATTTTCAGCAACC
Band lengths:
292-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]