HsaINT0166388 @ hg38
Intron Retention
Gene
ENSG00000069702 | TGFBR3
Description
transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr1:91716236-91716708:-
Coord C1 exon
chr1:91716568-91716708
Coord A exon
chr1:91716395-91716567
Coord C2 exon
chr1:91716236-91716394
Length
173 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CTGTGGGTTGTTATTTCCAGTTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
ATTGTGATACAGGTTCCAGCCCTTGGGGACAGTAGTGGTTGGCCAGATGGTTATGAAGATCTGGAGTCAGGTGATAATGGATTTCCGGGAGATATGGATGAAGGAGATGCTTCCCTGTTCACCCGACCTGAAATCGTGGTG
Seq A exon
GTATGTGTTTGTTATCAGTAGGGGGTTTGTGGAAAATGCTGTCTATTTTGTTGGCTTTAGTTAGGGACTATCTGAAAATAAAATCAGATGTTAAAAGCCAAAGCTCATGAAGCTACAGGGCCTTCATCCTTCATATGACTGTCATTAATCTTCCTGTGGGTTGTTATTTCCAG
Seq C2 exon
TTTAATTGCAGCCTTCAGCAGGTGAGGAACCCCAGCAGCTTCCAGGAACAGCCCCACGGAAACATCACCTTCAACATGGAGCTATACAACACTGACCTCTTTTTGGTGCCCTCCCAGGGCGTCTTCTCTGTGCCAGAGAATGGACACGTTTATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000069702:ENST00000370399:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(16.9=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATACAGGTTCCAGCCCT
R:
GGCACCAAAAAGAGGTCAGTGT
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains