BtaINT0148514 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25490640-25493317:+
Coord C1 exon
chr2:25490640-25490747
Coord A exon
chr2:25490748-25492946
Coord C2 exon
chr2:25492947-25493317
Length
2199 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ATTTTAATTTTTTTTTTAAGGCC
3' ss Score
9.01
Exon sequences
Seq C1 exon
CCATTTGGTCACAATCAATCTCAGCAAGACATTCTTCAAGAAAATACGATATTAAAAGCCACTGATGTCCAATTCCCTGTAAAACCTGTCGTAAGCAGTGAAGCAAAG
Seq A exon
GTACCAAATTTATGTAAATAAATTTTGTGAAGTGATTTTTTTATTTCATAAGTTGTGGTTAAAACAAAGTAAACATTAATAAGTAAAGCAAAAGGGACTGCAGCCACAGGCAAGTCTGTCCAATAGGGGTGGGCGATTTGCTCTGGAGAAGAGCTGCTTTGGTTGTGATAGTTTTTAAGGACCCAAGTATAGTCCATGATTTCTTTTAAGAAGGCAGGCTAAAGAGACCATAATCTATTACTATATTTACATAAAGTTCAAAAGACACAAAACTCAACTATGGTGTTTAGAAGTCAGATAGCTTATTACTCCAGTAGACTGGGGCAGAGGCAGTGCCCGTGACCAAAGGTGGGCATGAAGAGTCTTAGGTGGTTCTGATAAAGTTCTTTTTCTTGATTCATTTGCCAGTTATATAGCTACATTCATTTTGTGCTGTATGCTCCCTTAGGGAGAAAATATTACAGCAAAAAATGGCATCATTCTCTGGGCTAAACTAAATTAACAGGAAAATGGAATGACTGTTTTACGAAAGACAAATTTCAGAAAAAGAGGACTCTGGAGTTTTGTAGGGAGCAATGCAGTATTCCATATTCAACACAGTTTACAGGCATACCCCAGAGATGGCGTGGGTCTGATTCTATACCACTGCAATAAGGTGAATATTGCAATAAAGGAAGTCACACACAATTTTTGGTTTTCTGGTGCACATAAAATTATGTTTACATGGTAATGTTGTCTGTTAATTAGTGCAGTAGCATTATACCTAAAAAAATACTGTACATACCTTAATTTAAAATGCTTGCCTGCTAAAAACTGCTAAATAGACGTCATCTGAACCTTCAGCCAGTCTTTTTGCTGGTGGATGGTCTTGCTTTGCTGTTGATGGCTGCTGACTGGGCATGGTGGTGATGCTCAGGCAGCTTCACATTGATGGGACTCTTCCTTTCGGGAATAGTTTTTCTGTAGTGTACAGTGCTTTTGAGAGAAGTTCTTCTGTGAGTAAAATGATTTCAAAATTGAGTCAGTCCTCTCAAACCCTGCCACTGCCTTATGAAACTAAGTTTATTTAATATTCTAAATCCTTTATTGTCATTTCAGCAATTAAACTTGCGGTCTTATATGGGCACAGTTCATGGCATCCCCCAAACAGTTACAGAAGTAACAAGTCACTGATGACCACCACAAATAAATCATGATGCAAAGTCAAAACCTGCTAGGATTACCAAATGTGACAGAGCGAGCACATGCTGTTCGAAAAATGGTGCCAATAGGTTTGTTTGACGCAGGGTTGCCACAAACCTTCAATTTGAAAAAAACAAAAAACACAATATTTGCAAAGTGGAATAGAACAAGGTATGCCTGTACTGGAAGTCCTAGCCAGAACAGTTAGGCAAGAAAAAGAAATAAGAGGCATATAAATCAGAAAGAAGTAAAACTGTCACTAATGGTAGACAAGGGTTTTTATATATAAAATGATATTAAATATGTAGACCAAAAAACGCGGCAGCAAGGACTCAGATATTGTATACCAACTTCACAATAATTAAAAGTAAAACAACCGAAAAGTCAACCAACAGATAAATGGGTAAACAAAATGTAGCATATACACGCAATGGAATATTAGCCTTAAAAAGGAACAAAATTCTGATGCATGCTACGACATGGATGACTCAAGCATCACACTTAAGTGAAAGACACAGAAGGACGACTGCTGTATGATTCCACTCACATAAGGTGCTTAGAATAGCTGAATCATAAAAGAACATACTGGTTACCAAGGGCTGGGGGAAGGAGGAATAGGAGATATTGCCTAATGGGTACAGATTTCAGTTCTGGATGATGAAAAGTTCTGCAGATGGATAGTGGTGATGGTGTACTGCGGTGTGAGTGTGCTTAATGTCACTGAATTGTATACTTGGGTTAAAAATGCTCAGTTTTATGTTACGTTTATTTTATTCTCCATAAAAATTGTTTTAAACAAAAGAAATAACAGCTTTCCAGCCATAAGTGGTAGCAATAATATTTAGTACTGTGGACAATTAGAGGCTGAGAATTGAGAGTTGGATTTGCAATAATTTTATTGCTGGTTTCTTTTAATCTGATTCCCTAGTGAAATGAGATCTATTTTCTGAACTGTGTCCATCATCTGTATTATTCAGTTTATTAATACTTAGAAAAGATTTTAATTTTTTTTTTAAG
Seq C2 exon
GCCTTTATAAGACGCTGTTTGGCATACCGAAAAGAAGATAGGTTTGATGTGCACCAACTGGCAAATGACCCCTACCTTCTCCCACACATGAGAAGATCCAATTCTTCAGGCAACTTACACATGGCTGGGCTGACAGCATCACCCACACCCCCTTCTTCAAGCATACTTACTTACTGACTTTCCTCCAAAATCGGCATGATGTCTTTGAATTGCTTCCAGATGCACACTTGAGTTTGAGAGCTTCTGAGTGTTTTTGTTGTTTTTTTTTACACAGGATATGGTTGAGAACTGTTTGTGAACTGAAGTTTTTCATAGAGTCGTTTGTATGAGAGTGGATCATGGACCCTGAATAAATGTACACTTCTGACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918:ENSBTAT00000009090:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]