MmuINT0160573 @ mm9
Intron Retention
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70550465-70554776:-
Coord C1 exon
chr2:70554669-70554776
Coord A exon
chr2:70552223-70554668
Coord C2 exon
chr2:70550465-70552222
Length
2446 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
GCTATCTCTCTCTTTCAAAGGCC
3' ss Score
8.55
Exon sequences
Seq C1 exon
CCATTTGGTCACAATCAATCTCAACAAGACATTCTACAGGAAAACACAATACTGAAAGCCACAGAAGTCCAGTTCCCTGTAAAACCTGTTGTAAGCAGTGAAGCCAAG
Seq A exon
GTACTCATCTCCTAATGTTCTGTGGCGTGTCCAGCAGGGCTGCCGTTCCGCCGTGCTCTGGGGCGGGCTGCTCGGCCTGGACTGCTTGGCTGGTCTCCATCGTTAAGCACTCAGTTAAGCACTCAGTTAAGCACTCAGTGCTTCCTTAGCCTCTAAGCACAGCCACTTGATTTTGAAAATTAGGAAGAAACCACAACATCTGGGCCTTTATTACTTTTAGATCTTACTCAGTCTTCCTGTTGTAATGCGGAGATATTTAAGTCAAAAAAAAAAGGGGCTGTAGAGATGGTGCAGTGGTTGGGGCACTGGCTGCTCTATCAGAGTCAATTCCCAGCATCCACACACTTTACCACATCCTGTAACTCCATTGCCAGGGGATCTGACACCCTTGTCTCCATGAGGACACACACATTTCACTGACATCCATGAAGGCAAAACACTCATACAGATAGAATTAACAGTAATTTAAAAAAAGGAAAAAAAAAAGCCGGGCGTTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGTGGAGTCTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCGGAAAAGAAAATAAAAAATAAAAAATAAGGAAGAGAAGGTGTAATAATAGCTCTCATTTCTATAGTGCTTTTTATATATACACTGTGTGTTATTCTTAACTTTTGTAAAGCGAGAAAACAACCACAGCATAGAAAAAACACCTTGCTTAGAGTCTTGTGCCAAACACAGCAGTCTCCTGCTGACAGCACACCTTGTTCTCTGTGCTGGGGTGCACTGGGTCAGAGGTTAGTCCATAAGAGTCCTTTCTGGAAACCTGTTTCTAATCTGCATGTGTAATGTTCTTGGTAAAGTAGAGAGACCTAGAGCCCCCGCAGAGCAAGCCTTTCCTGACCTTGACTGTGCTGTGCTTCCGGTGCCCATGCCTTCATGTGTGCAATTCCCTGTTAGGATCCTACTGAAAATAACATCAGATCCCTAAGACAAAACCACAGAATTGCTGTTTTCTTATGTAAGTACTCTAGGCCATAAGAAAAATTGACCTTTAATCCCAATATTTTAAGAGGCAGGGGCAGATAGATCTCTGTGAATTTGAGACCAGCGTGATCTACATTGCAGGTTACAGTCCATCCTACATATTGAGATTCTGTCTCTAATAATAATAATAACAGCAGCAGCAACAACTACAGGTGATTGCAGTCAGAGCTTCCTTCATAGTTAATGCTGGCTTTGTGAACTCTTTTTGGAAATTATCCATGAATCTTCATTGGATTGGTTTTGTATTGTGTTTTTTAGTTTTTTTTTTTTGTTTTTGTTTCTTTTATTTTGGTTTTTTCAAGGCAAGGTTTCTTTGTGTAGAACAGACTGGCTTCAAACTCAGAGAACTGACTACCAACATCTCCCGAGTGCGGGAGTGCCGTGTGTCACTGTGACTGCTTTAGTTTTGTTTTTTGAGCTCAGGTCTCACTCTAGTTCAAGCCAGCCTTAAATATTTAATATAGGCTGTCTCTCTCACAATAACCCTCCATTCCAGGCTCCACAGGGCTAGTATTTTAGGTGTGAGGCACAGTTCTTAGAGGCTATAATAATTTAGCAATAAATTGACAATATGTATATTATGTATTTATATATTTCTTTAACATAATGGTATTTGACTTAGGGTTGGGTTTTTGGGGTTTTGTTGTTTGTTGGTTTTTGAAACAAGATCTTATTATATAGCCCTGGCTGGCCTAGAATTCACTGTGTAGACTGGTTTTAAAAGAAAACCAAAAATAAAAATAAAATTTAAAGATGCAGAGTTGACCTAGGAAACAGAAACCCTAATGGGACTTCTGTGTCAATGTGCTCTTCATTAAAGACAGTCACACTGACTAGAGGAAGAGATTGAGGCTAAGAATGGCTTCCTACAGTTTGACAAAACAAAACTGAAAACAAAATGTGATTAGAGTCAGAAAAAAATACAAACAAAAGCTATCTTAAGAATGTTGTTGGGGCTGGGAAGATGGCTCAGTGGTTAAGCACCCTGGCTGTTGTTCAGAGAGCCTGGGTCCAGTTCCCAGCACCCACATGACAGCTGACAACTGACACCCTCACACAGAGACTTGCAGGGAAAATACCAATGCACATGAAGTAAACATAAAGTGAAAATAAAGAATTTTGTAAGTAGAAATAAAACTTTGCAGCAATACATCCAAGGAAAGCAATACTGATTGAGCCTATGATGTGCCCGGGGGGTGCCACTGGAGGGTTGCAATTGGAGGAAAAATGTCATTGTTACCCCAAAAGTTGTTAAGGTTTGAACTTCTGTAAAAGCTGACCTGTCTGTAGTCTCTAACTGTCCTTGCTGCTGTGGGAGTTGGTGGGTTGGTGGTATTAGAAGGTAGGAGATGATTGTGTTGCTATCTCTCTCTTTCAAAG
Seq C2 exon
GCCTTCATAAGACGCTGTTTGGCTTACCGAAAAGAAGATCGATTTGATGTGCACCAGCTGGCAAATGACCCATACCTTCTGCCACACATGAGAAGATCAAATTCTTCAGGAAACTTACATATGTCTGGGCTGACAGCAACTCCCACACCTCCTTCTTCAAGCATAATTACTTACTGACTCCTCTAAGATTGGCATGACCTCTTCTCTTTGATTGGCTTCCAGATGCACACTTGAATTTGACTGCATTGGACTGTTTGTGGTATTTTTACATGGACATGGTTAAGAAGTGTTTGTGAACTAAGCTCTCCAAGGAGTCCTTGTGTGAGAGTGGATCATGGACAGTGACTAAGTACACACTCACTCCTCACTGCCCTGGAGCAGCACGAAACAGGAATACCATGTTACAGTAGAACAAGGGGACTCTGTAAATAACGTTTATAATACTTAAATATATTTGATTGTTACCAGAGAGTTGTAATATGAAGGGTAGTTTTTCATTATTTAAGAACACATGGAAAAATGAGGAGACATTTGTAACCCGGGAGCTACAGTGCCTGGTACAGCGTCAGCACTCGGCAGCTGATCTACAGAAACCAAAGCAAGAACTGAGTGACAGCAGCCGCTGTGTTTATAACAGAATGTGAGAGTTAGGGTCTTTGGACAGTTGGAGACTTTGTCATTTGCCTATTCTGACTTTTACCAAGTTGTACCTCGAGATCACGTGTCAGTGGTCCGCCGCCCTACCCCCGACCCCTTAACCGGTTATGTTAAAGGCAAGCTGTCGTTTCTGGACACTTTACACCTTTAACACAAAGAGCTGCCTATTTCAAATCAGTTGAAGTTACTAAATGATAGTATTTCCAGGGCTTTCAGTGGGTTAGATTAACAGGCGTTTTTCTTTTGTTTTCAGGCCTGGTTCATTAAAACAGAAGACAGTGTGTAACCAAAAGCAGGCCAGTTGTATGCAGGATAATGATGAATTCCCTTCTGGCTCTATTGTAAACTACTGTACAGATGTCGGATTACAATTACTGAGTTTCAGCAGCTTATTCTTGTACAAATGTTTAAAAATACGGCTTTTCTAATTGGATATTGTATTTTTTTTAAGTCTTCTTGAAGGCGCTTTAATTGCTGCTAAATGATATTGCTTTTTTGCTATAAAAAATTGAATGACCTTGAAGGCACAAGTTGACTGTACATCATAGAGAGATATTAAAAGCAGGCACTCGTTAACAATCAAGGCATGTGCAGTGATCCATGCTGGGCATATTGAGTTCTTCAAATCAGTTTTTTAGGTTCTGGAGCTGTGGAACACATAGAAACTAGATTTATAAATTGTTCATGGTTATTCTACATTTCTAGAAAGTTCTTAGCATCAAGGTGGGATGATAGTCCCATAGAATGTTTCTCGTGGTTTGTACAGATTTGTTAAAATGTGAACATTTTCTAACTACCTTGTGTGGTAGAAACCAATATTTTTTTGGGGATGCTGTATTTCATTCTTGAAAGGATTTTTTTTTCTTTATTGTCAAATTCATAATGCCGAGACTTACATGTAAGTTGTCCATGGTGCAGACAACAGGCTATCCCTGCCAGCCGCCCCTAACATGTACAGTTACACTGTGGCTCTTACCTGGTGTTGCAAGCCATTTCGTTTGTTTGTTTTCATTGTACATAGACACACTGTCTGTTTAAGATGCTGCTGGAATTATAGAGAATGTAGCCAAACAGTAATAAACAATGACAGTAAAAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997-Tlk1:NM_172664:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(9.0=42.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: