DreINT0163679 @ danRer10
Intron Retention
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3634091-3637687:+
Coord C1 exon
chr9:3634091-3634198
Coord A exon
chr9:3634199-3636975
Coord C2 exon
chr9:3636976-3637687
Length
2777 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTTGTTGTTGTTTTTGCAGGCG
3' ss Score
9.99
Exon sequences
Seq C1 exon
CCATTTGGCCACAACCAGTCCCAGCAAGACATCCTTCAGGAGAACACCATCCTGAAAGCCACAGAGGTTCAGTTTCCCTCCAAACCCGTCGCCAGCAACGAGGCCAAG
Seq A exon
GTCAGATTTTCTTTTAAGAATAATCAGTGTATGTAAAGCGCTCTATCAAACTGTATGAAGAGACTCAACAAACGGTAATAATAAACGTTTACAAAGTGCTGTAATACTTTCGAAAATCAAAATCGCAATATATAACCATGCCAAATATCAGATGGCTAGAAAGTGATACTTTGGTTTTTTTTTTTTTTTTTAGAAAATTGTTAAATGTTGGTGTCCGGGATGCAGCAAGTCCAGAGACTGTTGTGTCACTTTAATGTGTGATATGACTAAAATGTGGCCATAAATGCAGTCTGACACAACGACATTGAAACAAATCATAAAATTAAAGCTTATTATTTTAGTCTCTTGTCAAGACACAATCTAAAACAGACCTAAAACGGTAGGGATTAAGCCAAAGGAAGGCTGTATACCTCTTATTGTTATCCACGATCTTAGTTTCTCTCATATTTCACTCCCTGGAGCATCTGACATGTACCTCACCCTGGACATGCGTTAGGGCCTACCGTAATACACCCAAAACACAGATGACCGTAAAACACTTCAATGGCAGGGAAGCATTTTCTCTTGTTATCTGCAGGAAAAGAGTTAAATGAAAACATTTATCGAATTGACGCACATCATAATACCAGCCATACATGTAAAGCACAAATAATGCCTCCAATTCAGTAACGTCATGCGGCCGTCATCCTTGAACCAACCTCCATTATAGGGTATATGCCGAGCTAGTGCTGTTCCCATGCTGATAAACTTCCGGTGACCTGTTATTGTTAGTTTTTTTCATTTTAAACGATTCCTTTTACAGCATTGATGTTGTAATGTAGTCAAAATACAATTAGTTAAATAGACTCTGGCATTCATTTATTTGCTCAAGCTTAAATGAGACAAAAAGCCGTCTACTCGCACACACCCGTCAGAATCGACAGGCTAGCGCAGAAGCTCCATTGAATGTACTCAAGTAAAATAAATGCTCATATTATAAAGACATGGCGGGGGAAATGTAATTTAATGCAGTGCTTCTTGTACACTCTGAGACCCACCCTATATCAGATATCACTCAGCCAGTGGAAATCGATGATTCGAAGAAAACAGACCTTAAACACGCCGTTTTTGCAATGGCAAACAGTCCACCGGCAGCTCTTAACCCAGGTTACTGGCAAATTAAAAGTCCTATTAGCATGCCTTGGCATATACCCCATTGTAAGCTTCTTGCTGTTTTTTTCTGTTCCACTGCTGCATTTGTTAGATGTTTCCCGCTTTATATTTAAGTCTGAAGTGCATCAAATGCAGGAAACGCCCAAATTCGCTCCACAGGATGCCTAATCCAATCTTTGCATTGACTTCATGTAAATCACTCGCCCTTCATCTGCGTCCGCTCACTGCACAGGCTGCAAAACACTTCCGCCTCCCTTCCATGTAATGTAATGATTGTGAGGACGCAGGTGAAACGTCATTTTTTGAGAGACACTCAAATACATCACGTGCGCTGCTGCGTATGCGACGTCTATAAGTCACGTAAAGCCATAAATTGCAAACTGAAAAGATCTAATTTGATTATATGCTTTAAATTGTATGTTTTATGAGATTACTTACATTTTTCATGATTATTTTGTGTATAACCAGTTAAGCTCTACTGCTATTTTGGGATTTCCGCCTGGATTTTGCCTACCCAAATTTAAAAGCTTCTCAAATCCACATGCAGAGGTGTAAATGCAAAAATTTGGTATCATTTCAAAGAAAACCCTTTTGAATTTTCATTAAACACTATTGAAAGTGTTTAAAATAGCTGTATAGGTTATCTGTCTCACAATAAACACCTAAAAAAAAAGTTTTTTTTTATAAACTCAAATTTGAAAGTGTACCATTTAGGTTCTGAGTGGTCTAGCGTGCTGTAAATAATTTTGGTGGTTCCTGCACATGTCTGTAATCATAGGAAAAAAGAAAAATGTCTCCACCATAATCTATGCAAAAGTCATTGCACTCCAACTGATGAGAGGTGCTGTACAGGCCACAGAGGCCGATCATTGTTTTCATATTTCACTATTCTTTTGCTTGATCAAACATAATTCACTGTGTTTGGAGCACGTCAGACATATAAAAGGATTACTTATGCACATCAGCTCAAAAACAGAGGAGAAATGGCCCTGAAGCGCACAGAATAAGGTAAGAGATGACAGCTGTCTGTGCTATCTGGGGCTGCTTATTGATCATAAATGTATTGTTTTCACTTCTGCACCATGGAAACACCATGATTCATTTGGCAACTGTTTGATATGTGAATATAATTAAGTAAAAAGAATGCTAGAACCGTATGAGCACCGGCAAGAGCTTTCAATTGAGCTATAACTCGTACATGTGTCATATATAATTCAAATGAAAAAATATGAAAAGGAAACAATGTTCAATACCCAGCTCGGGTCTCCAAAATACTGTGTATTTAAGTGTAAATAACTTTTGTACAGTAGAATAAAAACCAAAGTGATGCATATGTGCATAAAATATAGATTCTACACTTTCAAACGAAACCACTTATGGGGGTCCGGTGCAATGCTAGCCCTTTAAATCTTAAAGTGAAAGTCAATGACTTCACGGTACCGGGTCGGCGGAGTTTAACTGTTAATTAAGAATTTTGCAGGATCGAAAAAGTTTACGATTTTTGTTAATTTTGCGTTGGATTCAGCGATCGCGGAATCGCAAAAAACTAGGGAGTCTGACTGTCATTAGTGTACTCTATAGAAATATACATACCTGTTATTGACATTTTGTTGTTGTTTTTGCAG
Seq C2 exon
GCGTTCATCCGCCGATGTCTGGCCTACAGAAAAGAGGACCGCTTTGACGTGCACCAGCTGGGCAGCGACTCCTACCTGCTGCCGCACATCAGACGGGCCAGTTCATCAGGAACACTGGCACCAAACTCCACCTCCTATTGACCCCCGCCAGCGTCCCAAATGCAGGATATGGACCACGAACAACAAGTAGTCGCCCTTTTCCTGCACTTCAGAACGTTCGTGTTGAATTATCATGCTTTGGTTTACAGACAGACGTGTTCAGAAAGAAAATGAAGTGAAAATAAGAAGCATGAATGTTTCGATTGTCACAATTAAAGTCAATGAAGTAGAAATGACGACTCGATAGGGCACATCTACTGTTATGAACTTTCAAATGTGACTGTTGTCGTTAGGTTTTTCACACCGTTGCCTCTTCGTTCAAAGACCTGGCAAAAAAAAAACAAACAAACCCCCTATCAATTCCCACGGTCTCGCTCGATTACACATTTACGTTCAGAGTTACTGTAAGCGGCCGACAAAGGCTTCATTCTTCACTCTGTAGTAATGTTACGTGGTACAGACAACAGTGTTAGCTTTCCTTGCTTTTGTTCAACTAGCTATGAGAATGTAATTCTAGCGTACAGAGAGCGGCACACTAAGGCGCCCAGGCCGCATATTAATGTTCAATGCACAAAGTAACCAAATGTAAACGAATGGCAAATGTACAGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467:ENSDART00000123074:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(9.0=53.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]