BtaINT0148516 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25433507-25435576:+
Coord C1 exon
chr2:25433507-25433553
Coord A exon
chr2:25433554-25435480
Coord C2 exon
chr2:25435481-25435576
Length
1927 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTGTTTCCTTTTACCCTCAGTAC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
Seq A exon
GTAAGTTCATTGAGGAATATCTTCAGTTCTTAATATAATTCTGCCATAGGCTGTTTGAACCACCAAGTCTGCTTTTGTTGATCTACTTGATTAAAGCAGAACTTAGGTACTATGTGATGTCCTGTCTTCCTAGGAACATTAAAGTTTACTTTTACTTTGGTATGGCACATCATAATTTTCAAAGGATTTTCTCCCATATTTTCTTGTAATAGGTCAGGAGATGGTCAAAGCAGGTATTAGTATTCCTGTTTTAGGTGAAGAACCTGAGAACCAGAGATGTTAAAGTAGCCTTGTTGTTTGGTCATGCAGCTGTGTCTGACTCTTTTGTGACCCTGTAGACTGTAGCTCGCCAAGGCCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGAATTGGGGTGCCATCTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTAAACTCTAGTTTCCTGCACTGGCAGGTGTACTCTTTACCACTGAGCCACCTGGGAAGCCGCATAAAGTATCCTACCTAAAGGCAAATTTTAAATGGAAGAGCCTCTAGAATTCTTTGTACTGTCAGTCAAGATTTTATTATACCAAAGCAACAGCTGAGGCCTGTGGATGGAGATTAAATAATGATAGAGATGTGAATCTAAAGAGTCCCTGAAAATAATAAACAGTGGTAAATTTAAATTTTTACCCTATCTGAAATGTTTCTTTGCCTGTACACAGAAACACTTTTACCTACCATTATGATATTAATGTGATTAATTATAAAATATTAGTGTGATTAGTAAAATAATAATCTAGTCTGTTGAAAAATATTTATATTTACTTGAGAGAGCAGAATTTGCTCGTTGGGAGAAGGGCTGTATTTTTTATATGTATATATATATAAATGCTGAGTTGAGAAGATCCCTCGCAGAAGGACATAGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGAGGGAAGAGCTTGGTGGGCTCTTCTCCATGGGGTTGCACTGAGTTGAATATGACTGAGTGACTAACACAGTCGCTCTCTTTCACTCATATATATATATATATATATATATACACACACATATATATATATGTATATATCCTCCATTGTTTTTCTTTTTTGAGTTTACAGAATCTAAGTTAAAACAGTTGCAGACTATAAAATACACCTAAAGCTCTTTAGTTGCTGTCAGTCCCTTAGTGTTAATGTCATTAAAAATCTTTGCCAAAGGTAGGGTCTGTTCAAATAAACACATCTCAGGTGTCTTGAATGCGTACTATGTGCTGAGCATTATGCTAGGCACTGTAGATTAAAAATCTAGAATAAGTTCTTTAGTTGTAGGAAGTTGTTTAATGAACACACTAGGAAGTCTCCTTTTCTGCTGTTCATACCTAATACCCAAAGATGAAGCCATTAGCAGCAAATTATTTTTGCCTTCCATTCTTGGTTCAGAAACATGAGACTTGAGAAAGCTATGGAACGGATAGGTGGCTTCTCTTCATATGTGATTAAGTCATTCACTATAATGCATGTAAGAAAGAATCAATTTGTATTAGACTTTGTGCTGTTAAGAAGGGGCTTGGTCCAGTAGTTGTTTTATAGTGCTATGAACATTTGGATACTTAACAGATCTTGGGAATGACAGTTCTGTCTTAAGATAGTTGATTAACATCTACATATCTACTTGTAAAGAGATTAAAGTTTCTTGGGATTAGAGCTCCTGCTGGCTTCACAAGCATAAGGGAACTGCTAAAATTTGAAGGAAAAATAAGACATGTTCTTTGCTTTGGGGAAATTTGTCTTTGAGTCTGCCACAAAAATAATATATATTTAAATTAATTCGTAATGCCATGTCTAAAACATCTTTCTAAACTTTGGTTTTATATGTGTGTATATATATATATATAGTGGTGTTTCCTTTTACCCTCAG
Seq C2 exon
TACCAAGGTGGAAATGGCTCAAGTCCAGTAAGAGGCATACCTCCTGCAATCCGTTCGCCTCAAAATTCACATTCACATTCCACGCCTTCTTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918:ENSBTAT00000009090:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]