DreINT0163684 @ danRer10
Intron Retention
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3613126-3614587:+
Coord C1 exon
chr9:3613126-3613169
Coord A exon
chr9:3613170-3614491
Coord C2 exon
chr9:3614492-3614587
Length
1322 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GTATTTCCCTCTTTCTGTAGTTT
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGAAGTCTGTCATCCGGGGACCCAAAATTAGCGATTATTTTGAT
Seq A exon
GTAAGTACTTGTTAGTAATTTGAGGGCAAGTAAATGACAGCATGTGATAAACCTTTGGCATCGGCTTAATTAAATGACAGCAGAACAGATATAAACACTCTGCAACTTGGGAGATAAAAACTAAATTGTAAACGGCATTTGTAAGCATGGATTTAATTTGTTGTGATTAGATTGTTTTGTGTAAGGAATTTTTAAATCAATGAGATTAATATTGATTTCTCATCTAAGAAGCATCAGACAAAGACATTTGGAGAAGGTGGAGAAAATATTATAGAGTAAAATAATTTTTAATGAAAGATGATTATTTTATGATAAATATTGTAATATATGTTTTAGTGTATTATAATACATTACATATTTAGATTGCAAACTCTTGAGCTAGACACAAGAAGATACTGTGTATCACATTTTATATAAGCACATTTATATTAATTAAAACCAAAAAATGATGTTTAATATTAATTTAAAAATGATCATTGTTTAGTTTTAGGCAGGTTTTTCTAGAACACGCTTCAGTTTTGAGTCTGCTTAACTTTTCGGTATGGACAAGCACAAACAAACCATTTCAAGTGTTGCTGAGGGTTTAAATCACTTTCAAATTTTTATTTCCTTACTAAAATCCAAAGCGATTTTTCTTCTCCACCTCATTTTTGTAACGTTGTTAAAGGATTAGTTTAACCAAGAATGGAAATTCTGTTATTAATCCCTCACCCTCATGTCGTTCCAGTCCCCTGAGACCTTCGTTCATCTTCAGGACACAAATAAAGATATTTTAGATGAAATCTGAGAGCTCCCTCATCCTCCATAGACAGCAGCAGTTCTAAGATGTTCAGAATACATGGAAAGAAGCCAAAATATGATTGAAACATTCCATGTGACTTCAGTGGTTCAACTGAATTTATACGAAGCTCCAATAACACTTTTGTGTACCAAACTTATAAATATTATTTATTGGTTTATATTACTATGGGCAAAATGAAATATTGCAGTTGAAGTATGCAAGTGTTGTATTTATGGTACACTTTGTATGATTACAGTTGATCCGCTGAAATCACATGGAGTTTTTGGACAATGTTTTTGGTTCTCTCATCTCTCTCGGATGTCTGAGGAGGGTTGCTATCTCTAGAGGATGAAGGAGTTCTTGTACTTTATCTAAAAAACTTCAATTTGTGTCCTAAAGATGAACATGGGGGTTGGAAAGTCAGGAAGAAGATGAGTAATTAATAACAAAATACTCATTTTTGAGTGAACTAACCCTTACTGGAGTGGTGTCTTTAAGTCCATAGGTAGGTCTCAATTAGAGTATTTCCCTCTTTCTGTAG
Seq C2 exon
TTTCACGGCGGTAACGGCTCCAGTCCAGTAAGAGGTCTACCGCCGGTCATCCGTTCTCCCCAGAACTCACATTCCCATTCTGCGCCAGGATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467:ENSDART00000123074:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]