GgaINT0048975 @ galGal3
Intron Retention
Gene
ENSGALG00000009569 | F1P396_CHICK
Description
NA
Coordinates
chr7:19584813-19585394:+
Coord C1 exon
chr7:19584813-19584859
Coord A exon
chr7:19584860-19585307
Coord C2 exon
chr7:19585308-19585394
Length
448 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATCATATCTTCCTTTCAGTAC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GAAAGAGTATTGGGGGACGTGGCCACAAGATTAGTGACTATTTTGAG
Seq A exon
GTAAGGTTTTTGTCTTTTAATTTACTATTTTTTTTTCCTGCAAGCACTTTTATGTGGTACTTGTGAACTCATTTGTTGTCAAATTCTGCAGTGACAACATAGCCTTGCTTTGTTCTTAGTAGACTACCCTTCTTCCAGTTATATATGAAAATACGAACCATAATAAACTATAGCCTTTCTTCATATGATACACCTTTTAAAAAATTTTTAATGTAAATTTAAGTGTCAAACCTTGAAGTAGAGATGCAGTTTCTTGGTGCAGCCTGAGCTAAAAGACAGAAAACAGTTTTTTCTGGACTTTTCTTTAGGTGACCCAAGGCTTCAGTAATCCAAGTAATGCAATCTAGATTACATGTTCATTGTACAGATGAGCTGTGTCATTCAGTGTTTGTATAATATATTTTAATTAAAGAGGTTGAGTAATTTGAGGATCATATCTTCCTTTCAG
Seq C2 exon
TACCAAGGTGGAAACGGCTCTAGTCCAGTTCGAGGTGTACCTCCTGCAATCCGATCTCCTCAGAATTCACATTCCGCCCCTTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569:ENSGALT00000015585:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]