GgaINT0048975 @ galGal4
Intron Retention
Gene
ENSGALG00000009569 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr7:17625261-17625841:+
Coord C1 exon
chr7:17625261-17625307
Coord A exon
chr7:17625308-17625754
Coord C2 exon
chr7:17625755-17625841
Length
447 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATCATATCTTCCTTTCAGTAC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GAAAGAGTATTGGGGGACGTGGCCACAAGATTAGTGACTATTTTGAG
Seq A exon
GTAAGGTTTTTGTCTTTTAATTTACTATTTTTTTTTCCTGCAAGCACTTTTATGTGGTACTTGTGAACTCATTTGTTGTCAAATTCTGCAGTGACAACATAGCCTTGCTTTGTTCTTAGTAGACTACCCTTCTTCCAGTTATATATGAAATACGAACCATAATAAACTATAGCCTTTCTTCATATGATACACCTTTTAAAAAATTTTTAATGTAAATTTAAGTGTCAAACCTTGAAGTAGAGATGCAGTTTCTTGGTGCAGCCTGAGCTAAAAGACAGAAAACAGTTTTTTCTGGACTTTTCTTTAGGTGACCCAAGGCTTCAGTAATCCAAGTAATGCAATCTAGATTACATGTTCATTGTACAGATGAGCTGTGTCATTCAGTGTTTGTATAATATATTTTAATTAAAGAGGTTGAGTAATTTGAGGATCATATCTTCCTTTCAG
Seq C2 exon
TACCAAGGTGGAAACGGCTCTAGTCCAGTTCGAGGTGTACCTCCTGCAATCCGATCTCCTCAGAATTCACATTCCGCCCCTTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569:ENSGALT00000015585:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]