BtaINT0150429 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021280 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:144222210-144225453:-
Coord C1 exon
chr1:144225301-144225453
Coord A exon
chr1:144222228-144225300
Coord C2 exon
chr1:144222210-144222227
Length
3073 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACGTATGTTTTCATTTCTAGAGG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GGAGACAGCGGGGGTCCCCTGGTATGTCAGGAGCGGAGGGTGTGGAAGCTGGTGGGAGCCACCAGCTTTGGCATCGGCTGTGCCGAGGTGAACAAGCCTGGAGTCTACACACGCATCACTTCCTTCCTGGACTGGATTCACGAGCAGATGGAG
Seq A exon
GTGGGTGCAGCCCCCAAGCCCCCTGCAGCTCATGTCGGAGCCTATCATTCTAGCTCTAGCATCCTTTCTGTGGGCCCCCAGTCCTGCTATCTGGAGCCAGGAGGTGACTAATTAGTTATTAATTTGTCAAGCAGTGACTTTGTGCTCCTGGGTGTGAACTAGGCACGGCTAACCCCACGAGCAAGGCCCTGGCAGGGTGGGCCTGGTGGGCTGGACATACACAGGGCGAGTGTGGCTGGGACATGGAGGATCATGTACTTCTGCCAACTGGGGAAACAGGAGGGGCGACTGAGGACCAGCTCTGGGGGTGGAGACCAGTCAGGTGGGCACGTGCAGGCATGGAGACAGGTGGGAGTGGTCTGGACTGGAAGCCCTCAGTGCCCACTGGGGAGTTTGACTTTGGGGAAACCAGGATGGGACGGAGCATCTGGAATCAGGAGGGGTCTGGGTGGCTCTGTGCCTTGGGGGCCTCCCTACAGTGGGGGTGGGAGGAGGGAGACAGGTCAGTGAGGTTGGCTTAGCAGGACAAGGGTGGGCAGGAAGAGCCCTGGAGATGGAGGGAGGAAGAACAGAGCATCCAGGGACAGAAAATGCCCAGCTGACTCCAGGTCCTACCGCAATGGCTTAGCAAACATGGGGTGACACCCTCCCTAGCAGCAGAAACCTCAGCCTGGCCTTCCACCCTATGGGCATTCAGCCAACGTTTACCTACTCGATTGCCAGGCTGAGCCCCATATCAGGCCTTGGACCACTTTTAAAGAACTTTGGTTTTTGGTTTTGCTGGGGGTTTTTTGTTGTTGTTGATTGAGGCAAAATATACGCAATGTGAAGCTGACCATCCTAAAGTGCAAATCTGGCAGCATTCAGCCCATGAAGGATGTTGTGTTGCTGCTGCCTGACCTGTACCCAGAACATTTTCATTTCCTGGAAATGAGACTCCATGAAGCAGTCACTCTGTGTTGCCAGGATCTCGTCCTCTGGCAGCCAGTAATCTACTTTCTGTCCTGGGGGATCAAGACCTTTTAAAATGCTCTCTGATAGCTCAGTTGGTAAAGAATCCACCTGCAATGCAGGAGACCCTGGTTCAATTCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTAACCTGGAGAATTCCATGGACTGTATAGTCCATGGGGTCTCAAACAGTCAGACATGACTGAGTGACCTTCACTTTCTTTTCATTTAAAGCAGCTGGCTAAGACGGCACCAAACTGCTCAAGTGCCTTGATGTCAATTTCCACTCCTTCTTCCTTGAATATTTGCCTTACATCAGGAGGGCAGGGCTGAGGCCCTGGGCCTGGGCCTGGTTAGAATTCCAGCCCTGCTGTTGTGTAGCTGTGTGCTATCAGCCCACTGCTGGGCAGCAGACAGGCTGCGGGGGAACCTGCTGGGGTGCTTTGGCTGTTAGCTTGCTGCCTGGCCCAGTGCTGAGGGCCATGCGGTACTCTTCAGCACAAAATTCAGCCGAAACCCATCACTCCCTCAGAAAACAGACATTTGAAAACGCAGCCTCCTCACTGCAGTGGCTGCAGACAGCCTGTGAACAGGACTAAAGGGGTTGAGAGCCATGTGGGGGATGGGGGAGGAGGGACCTGTGGGTGGGGAGTGGGAGGGTCACGTGGGCTGAGAGCCAAGTGGACAAGGGTGGGGCAGAGGACTCTTCCCATTCACCCAGGGAGCCTCAGAGGTGCACCCCCATGAGGGTGCTCGCGGGGTCAGAGGGTCTGTGTGACGAGGCTTGTCACAGCAGCAGGTTGAAGAAGCCTGGCTCAGTCCTGAGCTGGGCGGAGTGCAGGTCAGGCGCAGGGTTCCAAAATCACTGTGGGAGCTTCTGAAGGGAGGTGTCCTAATATCTCAGCCCATTTCCCTCAGCACTGCCCTGGCTATTGGCCCCTGGGATCATCTCCATATTACAGGTGATGGATCCTCATAAGCCCCCACCCAGGCTAATGAGGGGCAGAGCCTGAGTCTGCCCAGCTCCGAGAGCCCACCCCCACACTCGCCGCACAGCACAGTGATGAGTTCCAACCTGGGGTACAGAGCACCTCCCTCAGCTGCTTGCTAGCACTGAGGGTCCCAGCACCCGTTCCAGAGGTTCTCATCAGGCATCTGGTGGTTCAGATGCAGGAGGCTCCAGGGCGTGCTGGGGGAAGTGGGATGGTCAGAAAGGGCTCCCCTTCCCCCCAGAACTGGAGGAGCAGGCTCTTCTGGGCAGGTGGATGGCTCTCCTGAGGCCTGGGGAGCATATCAACCAGGGCTGCCCCGGGCCCTGAAGGCCTCTGTGAGTCACGTCCCCTCAAATGTCTCAGGGGACAACCCAGAAGATGCTTCCCTCCACGAGAGCTTTCCAGCAGGCCTGCCGTTTTAGTTGTTTCTTCTGAGCATCAGTGGGAGGGCCTTCCAGTAGCTCACATACCTCGAGGGGAATCAGCCCATCTTTTTTCTCTGATGCTAAAGGTTACTGCACCATTTTTCATCCACTAGTTTTCTCTCCCTACTGGGAGCTCGAATCATTGTTACAACTCAGAGCAGGACACAGGAACACTGATGCTAAGAGCTGGGAACTGTGGAAAAGTCTCAGGTTGGAGATGGAGAAGGTGGGGTGTGGCTGGTTGGAGGTGCACAGGGCAGGGAAACTATTTCACACTTACCTGGGGTCCACATGGAGCAGAGACCAATTTTATCCCCATTAATTGTGAACTTCTGATGCCCTCCTCAGGGCAAAATGCTGGTACTCATTTGATCTTGGGCTTCCCCAGTGGCTCAAGCAGTAAAGAATCCTCTGCAATGCAGGAGACACAAGGAGATGTGTGTTCAACCTGTGGGTGGGGAAGATCCCCTGGAGGAGGAAATGGTAACCCATTGTGGTATTTTTGCCTGAGAAATCCCATGGACCCTGGCAGGCCACAGTTCATGGGGTCGAAAAGAGTCAGACACGACTGGGCAAGCATTCACTCATGCTTTATCTTAATATTGGAGAGATGACTTGACATGATGAAAAAGGTAATACGTATGTTTTCATTTCTAG
Seq C2 exon
AGGGACCTGAAAACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021280:ENSBTAT00000028354:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development