HsaINT0169716 @ hg38
Intron Retention
Gene
ENSG00000160183 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr21:42371890-42375868:-
Coord C1 exon
chr21:42375716-42375868
Coord A exon
chr21:42372780-42375715
Coord C2 exon
chr21:42371890-42372779
Length
2936 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCTTTGTTTTCATTTATAGAGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GGGGACAGCGGGGGGCCCCTGGTGTGTCAAGAGAGGAGGCTGTGGAAGTTAGTGGGAGCGACCAGCTTTGGCATCGGCTGCGCAGAGGTGAACAAGCCTGGGGTGTACACCCGTGTCACCTCCTTCCTGGACTGGATCCACGAGCAGATGGAG
Seq A exon
GTGGGTGCGGCGCCCTCCCCAGCTCACGTTGTCCCTGGCTTTTGACCCTAAGGTCCCTTAAATGCAACCCTGGTCTTGCTATAAAAACCAGGGCGTGACCCAGTGGTTGTCAATTCAGCAGCAGTGACTTGGTGGCTCCAGGGTGTCAGACGCTTGTGCTGAAAACAGAGATCACAGCTAGTCCTGGGCAGCTCTGGGTGGGTGCAGCCTGGCAGGCAGAGGAGCTGGGGCCCGGGAGGAAGAAGGAGCCTCACGACATGGGAAAGGAGGAGGCAGCGAGGAGGAGCCCCTGCTGGGATGGGGATGGGTCGGGCGTGCCCCGTGTGCCAGGAGCAGGGAGAAAGTGGGAGGGGGCGGGGGGCTGAGACAGTGCGGGAGAGGACCTTGCCTGCCTGCTGAGGGGCTGGAACCTCGCTGGGAGCCAGGGATGAGAGGCAGCAGTCAGGAGAGGCTTGGGGAGCTCTGCATTGGTGGTGTGGGGGGGTGGGGGGTCCCGGAGGGGGAGGCGTGGAAGTGGGAGGGGCCTGCAGGGGGGCACCCAACAGCGAGGCTGGCTTGGCAGGACCCGGGCATGGAGGGGAAACCTGAGACGGTGGAGGAGGAAGAAGGAGGCTTAGGGCTTCGCTGGGACCCTGGCAGCTGCGTGCTGGCAGGTGAACACGGCGCCTTTCTCATGTGGGCGCCGGGGAAACATTTGCTGGCTTGATCTCAGATGAAGTCTCTCCTTGGGATGGTTTCAAACACAGGAGGTCCTCACTTAATACGGTTGATGGGATCTTAGAAACTGCAGCTTTAGGAGAAACAGTGCGCACAGGCCCTCCAGCAACGTCCTTGCTTGCAATGTAATTTTGTTATAAAGTCGATGAGAAAAAAAAAATTGGTTTCATTATATATCATTTTGCTTAAAGTCGTAGTTTCCAAGAACTAACAATGACGTCAAAGTAAGTACGTTTTTTTTCCCTAATTCAAGTGAAATTTATATAACATACAATTCACCATTTTAAAGTGAACAACCCTGTAGCATCAGCACATTCACAGGGCTGTGCAGACACCACCTTTGTCAGTTCCCAGCATTCTCATCTCCCAAAAGACACGCGGCACCCTAGAAGCACGCAGTTACTCCCCACTCCACTTTTCTCCCCAGCCTCTGGCACCCACCAGTCAGCTTTCTGTCTCCAAGGCTCAAAGACCTTTTTAAAAAGCTCATTTAATTTGAAACAATTGGCCAAGAAAGGACATCAAATGCTGAATGTGCCTCAGGCGTTAATTCCCGTTTTGCTCTCACTGATTTTGTGCTTTAAATGAGAAACTAAAGAATGGTGCCCACGGGCACAGGGTGAGGCCTGGGACTGAGACCTGGGCTAGCTTCACCTCCAGCACTGCCGCCCTGCAGCCCTGAGCACCCCCTCGGGGCGTGGTGAGGGCTGTGCTCGGGCTGGGTGGAAAGTGCTTGCTCCTGCTCACCTTGCTGGGAGAGGCAGCCTGGCCCCATACTAGGCACTGAGTGGCCTGCTATGCTCTTCAGTATAAAGCTCAGCCCAGCCCGCCCGCACTGTAGAAAGGACCAGGATGGACAACTGAATGGGAGACCTCCTCACTGTTCAGGGTGCTGTGGGAGCCTGGGGGGCACAGAAGGGTCGCGTGGGCACAGAGGGCAAAGGGCAGGAAAGGAGAAGCCGGTCCTCCACACGGGTCTGCAGTACATGGAGGCCTTCACGGGACACAGATCCCCAGGGGCTGAGCACTGAGCTGGTGATCCTAAAAGTCCCCCTTAAGACACTGAAGGCGCAAGGCAGAGAAGCCCACCGCCGTGTCTTCCAGCTGTCGTGGGTGAGCTGGAGACAAACGTTCAAAATCAGTCTGGGGAGCCCGCTCACAACGGTTCCATGACGGGGCCACCTCAGCCCCTCCCATGTCAGCACCGTCCTGGGCCACAGAGCCTGTGACCCTCCCTGTACTACAGCGGAGACGACCTGCATGAGGCCCCCCCAGCTAACAAGGGCAGAGTGTGCCTCACATCAGATCCCCGACGTGGCCCCAGTGTGACTGCACAGCAGAATCAACAGATCTCAAACTTAGGGGTGCAGAAGCCTCTCTCAGGATGTTTGTTAAATGTGAAGATTGCAGGGCGTTTATCTGGAGTCTGATTGGGAGGTCTGGGGTGAAGACCCTGGTGAATGTGTTGCATGGGGGCTTCAGGGCACACTGAGAAACCCTGGGAGGGTCTTGGAGGCAGTTTCCCCTGTTGTGGTGAAGCTGTGGTGGAGGAGCTCGTCTGTGACGCTGGCTCCGGCGATGCCTGGGGCCCCTGCTCCCTGCACAACGCCTTAGTCATCCGCTGCCTCCAACCCACCAGTGCATGCGAGAGATGCGCAGCCTCAGACACGCCCTTTCCCAAGTCCCTCTTCAGACGTCCTAGGGGAGACCCAGAAGAGACTTCCTTTCCTGGGAGGCTTTCCAGCAGGCCCGCTGTGCGTTTCAGTTGTCCATTGTGAGGAAAGTCAACGTGAGGGCCTTTGGAAGACTCACTGTCTTGCGGGGAAGTGTCCCGTGTGCTAGTTGGTGGCATGCCCATGGCCTCATCTTCATTTTCATCCAGCACTTTTCTCTATCTAGTTGGGGGTTTAAAACAAAATTGTTGTGACTCAAACCAGAACTCAGGAACATAGTGCCGAGACCTGGAAGTTTCCTACGGAAGTGACGGAACTGTCGCAGGGCGGAGATGGGACCTGCGGATGCATTGCTGGTTGGAGCTTTTCATGCCTGCCTGGGATCCACTCAGAGCTGGCAGCCCCAGGGGGAGGCCAACCTTGTCTTCATCGTGGAGAACAGCCCCACAATTCCCACAGGGCAAAATGCAGGTGCCCGCTCCGTCATCATGTTGGACGGATGGCTGGAAGTGCTAAAAACAATAACGCCTTTGTTTTCATTTATAG
Seq C2 exon
AGAGACCTAAAAACCTGAAGAGGAAGGGGACAAGTAGCCACCTGAGTTCCTGAGGTGATGAAGACAGCCCGATCCTCCCCTGGACTCCCGTGTAGGAACCTGCACACGAGCAGACACCCTTGGAGCTCTGAGTTCCGGCACCAGTAGCAGGCCCGAAAGAGGCACCCTTCCATCTGATTCCAGCACAACCTTCAAGCTGCTTTTTGTTTTTTGTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGAAATCCCTGCTCACTGCAGCCTCCGCTTCCCTGGTTCAAGCGATTCTCTTGCCTCAGCTTCCCCAGTAGCTGGGACCACAGGTGCCCGCCACCACACCCAACTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGCTCTCAAACCCCTGACCTCAAATGATGTGCCTGCTTCAGCCTCCCACAGTGCTGGGATTACAGGCATGGGCCACCACGCCTAGCCTCACGCTCCTTTCTGATCTTCACTAAGAACAAAAGAAGCAGCAACTTGCAAGGGCGGCCTTTCCCACTGGTCCATCTGGTTTTCTCTCCAGGGGTCTTGCAAAATTCCTGACGAGATAAGCAGTTATGTGACCTCACGTGCAAAGCCACCAACAGCCACTCAGAAAAGACGCACCAGCCCAGAAGTGCAGAACTGCAGTCACTGCACGTTTTCATCTCTAGGGACCAGAACCAAACCCACCCTTTCTACTTCCAAGACTTATTTTCACATGTGGGGAGGTTAATCTAGGAATGACTCGTTTAAGGCCTATTTTCATGATTTCTTTGTAGCATTTGGTGCTTGACGTATTATTGTCCTTTGATTCCAAATAATATGTTTCCTTCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160183:ENST00000291532:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains